View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19035_high_4 (Length: 413)
Name: NF19035_high_4
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19035_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 33659538 - 33659234
Alignment:
| Q |
14 |
gtttgaagattcaaacatattgaaaaattgtaatgatgatcaaacataaatctatccaatattattgcaacaacatgtggaatcggcattgttttttgca |
113 |
Q |
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| T |
33659538 |
gtttgaagattcaaacatattgaaaaattgtaatgatgatcaaacataaatctatccaatattattgcaacaacatgtggaatcggcattgttttttgca |
33659439 |
T |
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| Q |
114 |
cactttcctgcatcgatgccttttgactttaaacaaaattggtggcattttgaatcatctgggactgaacatgctcccataacaaagcaaggtcctggat |
213 |
Q |
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| T |
33659438 |
cactttcctgcatcgatgccttttgactttaaacaaaattggtggcattttgaatcatctgggactgaacatgctcccataacaaagcaaggtcctggat |
33659339 |
T |
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| Q |
214 |
ttttcacaacattttttgctacaggcaataaaacacg-ttagaaaatatcatctaatcttctggagaaatacttggcatttcaaatttcttatataattt |
312 |
Q |
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| T |
33659338 |
ttttcacaacattttttgctacaggcaataaaacacgtttagaaaatatcatctaatattctggagaaatacttggcatttcaaatttcttatataattt |
33659239 |
T |
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| Q |
313 |
ttcat |
317 |
Q |
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||||| |
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| T |
33659238 |
ttcat |
33659234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 33654298 - 33654050
Alignment:
| Q |
23 |
ttcaaacatattgaaaaattgtaatgatgatcaaacataaatctatccaatattattgcaacaacatgtggaatcggcattgttttttgcacactttcct |
122 |
Q |
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| T |
33654298 |
ttcaaacatattgaaaaattgtaatgat---caaacataaatctatccaatgttattgcaacaacatgcgt--tcg----tgtctttgtgacactttcct |
33654208 |
T |
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| Q |
123 |
gcatcgatgccttttgactttaaacaaaattggtggcatttt---gaatcatctgggactgaacatgctcccataacaaagcaaggtcctggatttttca |
219 |
Q |
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| T |
33654207 |
ttatcgatgccttttgacgttttacaaaattggtggcatttttctgaatcatctgg------acatgctcctaaaaaaaagcaaggtcctggatttatca |
33654114 |
T |
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| Q |
220 |
caacattttttgctacaggcaataaaacacgttagaaaatatcatctaatcttctggagaaata |
283 |
Q |
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|| || ||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
33654113 |
cagcagcttttgctacaggcaataaaacacatttagaaatatcatctaatattctggagaaata |
33654050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 33659162 - 33659123
Alignment:
| Q |
359 |
aagaaatatgcatttaaaacaccactctcggatagttcct |
398 |
Q |
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| T |
33659162 |
aagaaatatgcatttaaaacaccactctcggatagttcct |
33659123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 371
Target Start/End: Complemental strand, 33659214 - 33659179
Alignment:
| Q |
336 |
atagttcctacaatttaaagctaaagaaatatgcat |
371 |
Q |
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| T |
33659214 |
atagttcctacaatttaaagctaaagaaatatgcat |
33659179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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