View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19035_low_1 (Length: 553)
Name: NF19035_low_1
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19035_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 45 - 497
Target Start/End: Original strand, 40125283 - 40125727
Alignment:
| Q |
45 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
144 |
Q |
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||||| |||||||||||||| | ||| || | ||| ||||||||||||| ||||||||| ||| ||||| ||||||| || |||||||||| |||| |
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| T |
40125283 |
ccttcccttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40125379 |
T |
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| Q |
145 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
241 |
Q |
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|||||||||||||||||||||||||| |||| |||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40125380 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40125476 |
T |
|
| Q |
242 |
taactggtgttttgttcctcccgtcatcaccccaagagtttgatttgttttaatttgaagctgctctttggctaaaataaagtagttgtatttttatctt |
341 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125477 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttg-----gaagctgctctttggctaaaataaagtagttgtatttttatctt |
40125571 |
T |
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| Q |
342 |
atttttggttaagaaaaagtagatgtttaagttgtggatgtgaggtctatgacgaatacatacatagtttatgaatttaatataccagcaaatcataggt |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40125572 |
atttttggttaagaaaaagtagatgtttaagttgtggatgtgaggtctatgacgaatacatacatagtttatgaatttaatataccagaaaatcataggt |
40125671 |
T |
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| Q |
442 |
aaatgatttttgtgatcctaaattggctatatggccacacattgtagaaatgcagg |
497 |
Q |
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| T |
40125672 |
aaatgatttttgtgatcctaaattggctatatggccacacattgtagaaatgcagg |
40125727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 40121595 - 40121874
Alignment:
| Q |
9 |
agcagcacagaccataccactgctaagaacattgttccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgc |
108 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40121595 |
agcaccacagaccataccactgctaagaatattgttccttctcttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgc |
40121694 |
T |
|
| Q |
109 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaatatgtacacctagtttgtt |
208 |
Q |
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| T |
40121695 |
cggtgagcactactactaccagctggtatcaatactttcaagctgaatattttggaaagaattatgaggaaaaggaggtaata---acacctagtttgtt |
40121791 |
T |
|
| Q |
209 |
ggaaatgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccgtcatcaccccaagagtttgatttgttt |
291 |
Q |
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| T |
40121792 |
ggaaatgaatttgttctcaccaacttcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgttt |
40121874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 45 - 291
Target Start/End: Original strand, 40092811 - 40093054
Alignment:
| Q |
45 |
ccttctcttccaatgaaaaatctatcaagcagaaacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatact |
144 |
Q |
| |
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||||| |||||||||||||| | ||| || | ||| ||||||||||||| ||||||||| ||| ||||| ||||||| || |||||||||| |||| |
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| T |
40092811 |
ccttcccttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaata---gctggtatcagtact |
40092907 |
T |
|
| Q |
145 |
ttcaagctgaatattttggaaagaattatga---ggaaaaggaggtaatatgtacacctagtttgttggaaatgaatttgttctcaccaacttcttttgg |
241 |
Q |
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|||||||||||||||||||||||||| |||| |||| ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40092908 |
ttcaagctgaatattttggaaagaataatgatcaggaagaggaggtaata---acccctagtttgttggaattgaatttgctctcaccaacttcttttgg |
40093004 |
T |
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| Q |
242 |
taactggtgttttgttcctcccgtcatcaccccaagagtttgatttgttt |
291 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40093005 |
taactggtgttttgttcctcccatcatcaccccaagagtttgatttgttt |
40093054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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