View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19035_low_11 (Length: 238)
Name: NF19035_low_11
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19035_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24058830 - 24058607
Alignment:
| Q |
1 |
aagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24058830 |
aagaggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgtcttcacatcacggtgaattatgctt |
24058731 |
T |
|
| Q |
101 |
tgtttagctccagtgtgaagataaagaagtcctttcgcagcccctatgcctatcccaagacgttgcttccaagacagtggaacaaagtctctcccatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24058730 |
tgtttagctccagtgtgaagataaagaagtcctttcgcagccccgatgcctatcccaagacgttgcttccaagacagtggaacaaagtctctcccatata |
24058631 |
T |
|
| Q |
201 |
gatgactactgagagatccatttg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24058630 |
gatgactactgagagatccatttg |
24058607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 30730622 - 30730402
Alignment:
| Q |
4 |
aggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgt |
103 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
30730622 |
aggaccctttttcgatatgccaaaatcagaaacttttggcacaatctttttgtccaagagaatgtttgttgtcttcacgtcacggtgaattatgctttgt |
30730523 |
T |
|
| Q |
104 |
ttagctccagtgtgaagataaagaagtcctttcgcagcccctatgcctatcccaagacgttgcttccaagacagtggaacaaagtctctcccatatagat |
203 |
Q |
| |
|
|||||||||||||||||||| | |||||| || |||||||||| || |||| | || |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
30730522 |
ttagctccagtgtgaagatataaaagtccctttgcagcccctaagcatatcgctaggcgttgcttccaagatagaggaacaaagtctctcccatatagat |
30730423 |
T |
|
| Q |
204 |
gactactgagagatccatttg |
224 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
30730422 |
gactgctgagagatccatttg |
30730402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 33872813 - 33872733
Alignment:
| Q |
22 |
gccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttg |
102 |
Q |
| |
|
|||||| ||||||||||| | |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||| ||||| |
|
|
| T |
33872813 |
gccaaagtcagcaactttagcaacaaagttatcatctaaaagaatgtttgtcgtctttacatctcggtgaattatactttg |
33872733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 14685114 - 14684896
Alignment:
| Q |
5 |
ggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtt |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
14685114 |
ggaccctttttcgatatgccaaaatcagcaacttttggcacaagattttcgtccaagagaatgtttgctgtcttcacatcacggtgaattatgctttgtt |
14685015 |
T |
|
| Q |
105 |
tagctccagtgtgaagataaagaagtcctttcgcagcccctatgcctatcccaagacgttgcttccaagacagtggaacaaagtctctcccatatagatg |
204 |
Q |
| |
|
||||||||||||||||||| | |||||| || || ||||||| || |||| || |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
14685014 |
tagctccagtgtgaagatataaaagtccctttgc-gcccctaagcatatcattaggcgttgcttccaagatagaggaacaaagtctctcccatatagata |
14684916 |
T |
|
| Q |
205 |
actactgagagatccatttg |
224 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
14684915 |
actgctgagagatccatttg |
14684896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 14671198 - 14671418
Alignment:
| Q |
4 |
aggacccttttttgatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgt |
103 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || | ||||||||||||||||||| | |
|
|
| T |
14671198 |
aggaccctttttcgatatgccaaaatcagcaacttttggtacaagattttcgtccaagagaatgtttgttgtctttatgtcacggtgaattatgctttct |
14671297 |
T |
|
| Q |
104 |
ttagctccagtgtgaagataaagaagtcctttcgcagcccctatgcctatcccaagacgttgcttccaagacagtggaacaaagtctctcccatatagat |
203 |
Q |
| |
|
|||||||||||||||||||| | |||||| || |||||||||| || |||| || |||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
14671298 |
ttagctccagtgtgaagatataaaagtccctttgcagcccctaagcatatcattaggcgttgcttccaagatagaggaacaaagtctctcccatatagat |
14671397 |
T |
|
| Q |
204 |
gactactgagagatccatttg |
224 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
14671398 |
gactgctgagagatccatttg |
14671418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 14676733 - 14676796
Alignment:
| Q |
161 |
cgttgcttccaagacagtggaacaaagtctctcccatatagatgactactgagagatccatttg |
224 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14676733 |
cgttgcttccaagatagaggaacaaagtctctcccatatagatgactgctgagagatccatttg |
14676796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University