View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19035_low_12 (Length: 204)

Name: NF19035_low_12
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19035_low_12
NF19035_low_12
[»] chr6 (1 HSPs)
chr6 (1-204)||(13207486-13207689)
[»] chr5 (3 HSPs)
chr5 (1-204)||(43378713-43378916)
chr5 (1-104)||(11339387-11339492)
chr5 (130-189)||(11336441-11336500)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13207689 - 13207486
Alignment:
Q  1 tcacttattaacactatcaaattttgttcagaaaaataaataccactggaagttgttttaaggttttggagctataaaaacaccatcgtacaacaaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  13207689 tcacttattaacactatcaaattttgttcagaaaaataaataccacttgaagttgttttatggttttggagctataaaaacaccattgtaaaacaaccat 13207590  T
Q  101 gaattatgaaggaagaaaggtgttgtgtcagaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagattaga 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13207589 gaatgatgaaggaagaaaggtgttgtgtcagaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagataaga 13207490  T
Q  201 gcgc 204  Q
    ||||    
T  13207489 gcgc 13207486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 43378916 - 43378713
Alignment:
Q  1 tcacttattaacactatcaaattttgttcagaaaaataaataccactggaagttgttttaaggttttggagctataaaaacaccatcgtacaacaaccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  43378916 tcacttattaacactatcaaattttgttcagaaaaataaataccacttgaagttgttttatggttttggagctataaaaacaccattgtaaaacaaccat 43378817  T
Q  101 gaattatgaaggaagaaaggtgttgtgtcagaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagattaga 200  Q
    |||| |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43378816 gaatgatgaaggaagtaaggtgttgtgtcagaggcagctgttatttagagagaaggaagaaaggaatgtgggtgttgtaccagagagaaagaagataaga 43378717  T
Q  201 gcgc 204  Q
    ||||    
T  43378716 gcgc 43378713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11339492 - 11339387
Alignment:
Q  1 tcacttattaacactatcaaattttgttcagaaaaataaa--taccactggaagttgttttaaggttttggagctataaaaacaccatcgtacaacaacc 98  Q
    ||||||||||| ||| ||||||||||||| ||||||||||  ||||||| ||||||||||| |||||| ||||||||||||||||||| ||  |||||||    
T  11339492 tcacttattaatactgtcaaattttgttctgaaaaataaaaataccacttgaagttgttttcaggtttgggagctataaaaacaccattgtgaaacaacc 11339393  T
Q  99 atgaat 104  Q
    ||||||    
T  11339392 atgaat 11339387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 11336500 - 11336441
Alignment:
Q  130 agaggcagctgttattatgagagaaggaagaaaggaatgtgggtgttgtaccagagagaa 189  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  11336500 agaggcagcagttattatgagagaaggaagaaaggaatgtgtgtgttgtatcagagagaa 11336441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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