View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19035_low_2 (Length: 548)

Name: NF19035_low_2
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19035_low_2
NF19035_low_2
[»] chr2 (21 HSPs)
chr2 (16-462)||(19945588-19946048)
chr2 (186-368)||(20142936-20143118)
chr2 (184-363)||(13716673-13716852)
chr2 (223-368)||(14131161-14131306)
chr2 (186-366)||(38320153-38320340)
chr2 (223-362)||(27007174-27007313)
chr2 (184-368)||(32975978-32976164)
chr2 (186-333)||(37714391-37714538)
chr2 (208-336)||(35457391-35457518)
chr2 (184-370)||(37899469-37899645)
chr2 (190-368)||(3167868-3168045)
chr2 (191-361)||(4434270-4434443)
chr2 (200-369)||(27407404-27407572)
chr2 (257-368)||(31845453-31845560)
chr2 (447-527)||(19945484-19945567)
chr2 (287-368)||(31264827-31264908)
chr2 (195-349)||(31645074-31645229)
chr2 (187-371)||(24183940-24184113)
chr2 (269-365)||(31125356-31125452)
chr2 (252-322)||(5881435-5881505)
chr2 (338-367)||(35458365-35458394)
[»] chr1 (22 HSPs)
chr1 (185-368)||(35412993-35413176)
chr1 (195-368)||(10061569-10061738)
chr1 (184-368)||(29657330-29657514)
chr1 (186-337)||(43537134-43537288)
chr1 (195-365)||(35149625-35149795)
chr1 (184-331)||(21540040-21540187)
chr1 (185-327)||(23906605-23906747)
chr1 (201-356)||(26469927-26470082)
chr1 (184-368)||(48852609-48852793)
chr1 (210-324)||(11470016-11470130)
chr1 (273-365)||(9113421-9113514)
chr1 (186-274)||(49313575-49313663)
chr1 (223-278)||(13085089-13085144)
chr1 (316-369)||(34475804-34475857)
chr1 (305-365)||(49401987-49402047)
chr1 (268-349)||(4684518-4684599)
chr1 (250-315)||(33077719-33077784)
chr1 (199-284)||(47996658-47996743)
chr1 (223-279)||(1062833-1062889)
chr1 (326-368)||(13085034-13085076)
chr1 (184-222)||(13085134-13085172)
chr1 (311-368)||(44958465-44958520)
[»] chr5 (13 HSPs)
chr5 (183-365)||(25493784-25493966)
chr5 (186-365)||(30735282-30735461)
chr5 (186-368)||(3040218-3040400)
chr5 (186-369)||(30700827-30701008)
chr5 (185-369)||(40519146-40519329)
chr5 (186-371)||(30071739-30071924)
chr5 (211-369)||(20359904-20360064)
chr5 (244-368)||(34280064-34280188)
chr5 (187-368)||(24402009-24402195)
chr5 (184-302)||(21259184-21259301)
chr5 (244-319)||(7547292-7547366)
chr5 (189-302)||(35875763-35875876)
chr5 (291-343)||(9666899-9666951)
[»] chr6 (8 HSPs)
chr6 (191-367)||(32871711-32871888)
chr6 (184-368)||(34713467-34713651)
chr6 (186-370)||(6784658-6784842)
chr6 (184-366)||(2130452-2130634)
chr6 (185-350)||(28867152-28867317)
chr6 (254-370)||(3855692-3855807)
chr6 (211-315)||(6519233-6519337)
chr6 (190-340)||(11301808-11301958)
[»] chr7 (14 HSPs)
chr7 (176-379)||(21882718-21882919)
chr7 (184-370)||(23611706-23611891)
chr7 (185-369)||(20125557-20125741)
chr7 (223-368)||(46413701-46413849)
chr7 (184-316)||(46297579-46297711)
chr7 (184-368)||(8123657-8123841)
chr7 (195-368)||(19511387-19511560)
chr7 (187-347)||(22631449-22631609)
chr7 (189-324)||(23730507-23730640)
chr7 (245-340)||(1985033-1985128)
chr7 (184-368)||(24250418-24250596)
chr7 (208-327)||(44600998-44601109)
chr7 (312-375)||(15127541-15127604)
chr7 (300-364)||(21147078-21147142)
[»] chr3 (12 HSPs)
chr3 (184-370)||(1632775-1632960)
chr3 (223-352)||(26442954-26443083)
chr3 (223-370)||(18271919-18272066)
chr3 (186-368)||(34905814-34905996)
chr3 (226-368)||(1713936-1714078)
chr3 (184-368)||(45852892-45853076)
chr3 (210-368)||(2671895-2672053)
chr3 (195-368)||(10593419-10593591)
chr3 (184-368)||(48897640-48897822)
chr3 (244-368)||(31192085-31192209)
chr3 (194-342)||(40840633-40840780)
chr3 (190-302)||(3169272-3169382)
[»] chr8 (13 HSPs)
chr8 (184-371)||(38585043-38585230)
chr8 (186-368)||(29414352-29414532)
chr8 (186-366)||(5718407-5718595)
chr8 (248-366)||(25124400-25124518)
chr8 (186-366)||(24068076-24068256)
chr8 (210-367)||(33543341-33543494)
chr8 (244-340)||(5686276-5686372)
chr8 (185-322)||(36947229-36947368)
chr8 (188-301)||(35393710-35393823)
chr8 (223-332)||(26415557-26415666)
chr8 (185-262)||(29543676-29543753)
chr8 (223-368)||(43063810-43063955)
chr8 (342-370)||(29543651-29543679)
[»] chr4 (19 HSPs)
chr4 (189-365)||(42504155-42504328)
chr4 (184-367)||(37762771-37762956)
chr4 (211-369)||(5288515-5288673)
chr4 (185-371)||(24060543-24060727)
chr4 (185-370)||(16528530-16528718)
chr4 (190-311)||(19482490-19482611)
chr4 (211-309)||(25817658-25817756)
chr4 (245-357)||(30220727-30220838)
chr4 (223-327)||(29065277-29065381)
chr4 (273-368)||(19663341-19663432)
chr4 (186-317)||(41545383-41545514)
chr4 (186-308)||(42108705-42108826)
chr4 (195-325)||(51304300-51304429)
chr4 (304-360)||(19482799-19482855)
chr4 (304-365)||(19663274-19663335)
chr4 (186-368)||(2765328-2765505)
chr4 (184-263)||(13218422-13218500)
chr4 (197-298)||(41485716-41485817)
chr4 (187-254)||(33883101-33883167)
[»] scaffold0194 (1 HSPs)
scaffold0194 (255-368)||(27067-27180)
[»] scaffold0122 (1 HSPs)
scaffold0122 (184-368)||(18600-18786)
[»] scaffold0018 (1 HSPs)
scaffold0018 (195-302)||(69949-70056)
[»] scaffold0247 (1 HSPs)
scaffold0247 (248-367)||(19220-19339)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 19946048 - 19945588
Alignment:
Q  16 ataaatggcattaatatttatacggttacttgttgctttgcatcatttggtgggaacattgaaatgtg----------aacatt----aagacgttgttt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          ||||||    ||||||||||||    
T  19946048 ataaatggcattaatatttatacggttacttgttgctttgcatcatttggtgagaacattgaaatgtggacttgtgggaacattgaagaagacgttgttt 19945949  T
Q  102 tatttctgacctgattgaagaatacattggtgaaaatttgtagtacttttgtattctaacaatataatggcaaatatttttgaagagcattgctatttat 201  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19945948 tatttctgacctgattgaagaatacgttggtgaaaatttgtagtactttcgtattctaacaatataagggcaaatatttttgaagagcattgctatttat 19945849  T
Q  202 ctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaa 301  Q
     |||| ||||||||| |||||||||| || ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19945848 ttagagagtttttattaagaatttattaaaaaaatgtctcggtcaattaaatttgttatttgacggaaattaagggaggtaatggtgtgtaattaaggaa 19945749  T
Q  302 atgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccatttttgaattatctatgataacatatttgttt 401  Q
    |  | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  19945748 agatattaacaaatacactgtcttaaaattttcttgataaattttgtcactgtatctatcattttccatttttgaattatctatgatagcatatttgttt 19945649  T
Q  402 tggttacaatctatgttagcatttatcacacaaaattcttaatttgacatgtactcgattt 462  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19945648 tggttacgatctatgttagcatttatcacacaaaattcttaatttgacatgtactcgattt 19945588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 186 - 368
Target Start/End: Original strand, 20142936 - 20143118
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||| || ||   ||||||||||| ||||||| |||||||||||| ||||||||    
T  20142936 gagcattgttatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatg 20143035  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
     |||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20143036 atgtgtaattaaggaaaggtgttagaaaatacactatcttgaaattttcttgataaattttgtcactgtatctatcatttccc 20143118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 184 - 363
Target Start/End: Complemental strand, 13716852 - 13716673
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||   ||||||||||||| ||||| || ||||||| ||||||||    
T  13716852 aagagcattgctatttatctagagagtttttatcaagaatttatcaagaaaaagtctcaaccaattaaatttgtgatttggcgaaaatcaaaggaggtaa 13716753  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcat 363  Q
    | ||||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13716752 tagtgtgtaattaagaaaaggtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtatctatcat 13716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 223 - 368
Target Start/End: Original strand, 14131161 - 14131306
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    |||||||||||||||| | |  ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |    
T  14131161 tttatcaagaaaatgtctggaccaattaaatctgttatttggcggaaatcaagcgagataatggtgtgtaattaaggaaatgtgttagcaaatacactat 14131260  T
Q  323 cttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||    
T  14131261 cttaaaattttcttcataaattttgtcactgtatctatcatttccc 14131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 186 - 366
Target Start/End: Complemental strand, 38320340 - 38320153
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||||  ||||   |||||||||||||||||||  ||||||||| ||||||||||    
T  38320340 gagcatcgttatttatctagagagtttttatcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatg 38320241  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaa-------ttttcttgataaattttgtcactgtatctatcatttc 366  Q
     ||||||| ||||||||||||||| ||||||||||||||| |||       |||||||||||||||||| ||||||||||||||||||    
T  38320240 atgtgtaaataaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaattttgccactgtatctatcatttc 38320153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 223 - 362
Target Start/End: Original strand, 27007174 - 27007313
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    |||||||||||| ||| ||   ||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  27007174 tttatcaagaaattgtctcaaccaaataaatttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgt 27007273  T
Q  323 cttgaaattttcttgataaattttgtcactgtatctatca 362  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  27007274 cttaaaattttcttgataaattttgtcactgtatctatca 27007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 184 - 368
Target Start/End: Complemental strand, 32976164 - 32975978
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggt-- 281  Q
    ||||||| ||||||||||||||| || |||||||||||||| ||||||||||||| ||   ||||||||||||||||||| |||||||||| | ||||      
T  32976164 aagagcaatgctatttatctagagagattttatcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaaggtaa 32976065  T
Q  282 aatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||||| |||||||||| ||| ||||||  ||||||||||| ||||||||||||||||| || |||||  |||||||||||||||||    
T  32976064 aatggtatgtaattaagaaaaggtgttagtaaatacactgttttgaaattttcttgatacatattgtcgatgtatctatcatttccc 32975978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 186 - 333
Target Start/End: Original strand, 37714391 - 37714538
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||||||||||||||||| ||||||||||||  |||||||||||||| || ||   |||||||||||||||||||| ||||||||| |||| |||||    
T  37714391 gagcattgctatttatctagagagtttttatcaatgatttatcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatg 37714490  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaatttt 333  Q
    ||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  37714491 gtgtgtaattaaggaaaggtgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 35457391 - 35457518
Alignment:
Q  208 agtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgt 307  Q
    |||||||||||||||||||| ||||||| |||||  |||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  35457391 agtttttatcaagaatttat-aagaaaaggtttcaatcaattaaatttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatgtgt 35457489  T
Q  308 taacaaatacactgtcttgaaattttctt 336  Q
    ||||||||| ||| |||| ||||||||||    
T  35457490 taacaaatatactatcttaaaattttctt 35457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 184 - 370
Target Start/End: Complemental strand, 37899645 - 37899469
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||   ||||||||||||| ||||| || ||||||| ||||        
T  37899645 aagagcattgctatttatctagagagtttttatcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaaggag---- 37899550  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccat 370  Q
          ||||||| ||||||||||||  ||||||| |||||  ||| |||||||||| |||||||||||||||||||||||||||||    
T  37899549 ------gtaattatggaaatgtgttagtaaatacattgtctaaaaaatttcttgatacattttgtcactgtatctatcatttcccat 37899469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 190 - 368
Target Start/End: Original strand, 3167868 - 3168045
Alignment:
Q  190 attgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgt 289  Q
    |||||||||||| || ||||||||||| |||||||| | ||||||| || ||   ||||||||||| ||||||| |||||||||| | |||||||| |||    
T  3167868 attgctatttatttaaaaagtttttattaagaatttgttaagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgt 3167967  T
Q  290 gtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||||||| |||| |||||| |||||| ||| | |  |||||||||||||||||||||||||| |||||||||||||||    
T  3167968 gtaattaaagaaaggtgttagcaaatatactatttaaaaattttcttgataaattttgtcact-tatctatcatttccc 3168045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 191 - 361
Target Start/End: Original strand, 4434270 - 4434443
Alignment:
Q  191 ttgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggag---gtaatggt 287  Q
    |||||||||||  ||| || |||||| ||||||| |||||||||| ||  | ||||||||||||||||||||| || ||||||||||||   ||||||||    
T  4434270 ttgctatttattgagagagattttattaagaattgatcaagaaaaggtcccagtcaattaaatttgttatttgccgaaaatcaagggaggaggtaatggt 4434369  T
Q  288 gtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatc 361  Q
    ||||||||||| |||||||||  |||||| | ||| ||||||||||||| ||| | ||||||||||||| ||||    
T  4434370 gtgtaattaagtaaatgtgttggcaaatatattgttttgaaattttcttaatacagtttgtcactgtatatatc 4434443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 200 - 369
Target Start/End: Original strand, 27407404 - 27407572
Alignment:
Q  200 atctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaagg 299  Q
    ||||||| ||| ||||||||||||| ||||||||||  | || | ||||||||||||||||||  |||||||||||| || ||||| |||||||||||||    
T  27407404 atctagagagtgtttatcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaagg 27407503  T
Q  300 aaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 369  Q
    |||||| ||| |||||||| | |||| ||||||| ||  |  | ||||||||||||||||||||||||||    
T  27407504 aaatgtattagcaaatacagtatcttaaaattttgtt-cttgagtttgtcactgtatctatcatttccca 27407572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 257 - 368
Target Start/End: Original strand, 31845453 - 31845560
Alignment:
Q  257 ttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtat 356  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||  ||||| ||||||||||||||  |||||||||||||||| ||||    |||||    
T  31845453 ttatttgtcggaaatcaagagaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtctaaaaattttcttgataaaatttg----tgtat 31845548  T
Q  357 ctatcatttccc 368  Q
    ||||||||||||    
T  31845549 ctatcatttccc 31845560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 447 - 527
Target Start/End: Complemental strand, 19945567 - 19945484
Alignment:
Q  447 gacatgtactcgatttattaaa---taattagatatttcattgaataagtaattagaaatctgacggtcatattctgtagacac 527  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  19945567 gacatgtactcgatttattaaaggataattagatatttcattgaataagtaattagatatctgacagtcatattatgtagacac 19945484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 287 - 368
Target Start/End: Original strand, 31264827 - 31264908
Alignment:
Q  287 tgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||||||||||||||| |||||| |||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttccc 31264908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 195 - 349
Target Start/End: Complemental strand, 31645229 - 31645074
Alignment:
Q  195 tatttatctagaaagtttttatcaagaatttatcaagaaaa-tgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaa 293  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||| |    ||||||||||| | ||||| |||||||||||  | |||||| |||||||    
T  31645229 tatttatctagagagtttttatcaagaatttatcaaaaaaaatgtcttaaccaattaaatttttaatttggcggaaatcaagaaacgtaatgatgtgtaa 31645130  T
Q  294 ttaaggaaa-tgtgttaacaaatacactgtcttgaaattttcttgataaattttgtc 349  Q
    ||||| |||  |||||| |||||||| | |||| |||||||| ||||||||||||||    
T  31645129 ttaagaaaagggtgttagcaaatacattctcttaaaattttc-tgataaattttgtc 31645074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 187 - 371
Target Start/End: Original strand, 24183940 - 24184113
Alignment:
Q  187 agcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatgg 286  Q
    ||||||| | ||||| |||| |||||||||  | ||||||||||||||| ||||| | ||||||||||| ||||||| ||||| ||||  ||||||||||    
T  24183940 agcattgttgtttatttagagagtttttattcataatttatcaagaaaaggtttcagccaattaaatttattatttgccggaactcaatagaggtaatgg 24184039  T
Q  287 tgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaatt-ttcttgataaattttgtcactgtatctatcatttcccatt 371  Q
    ||||||||           |||| |||||||||||||| ||| || || || ||  ||||||||||||||||||||||||||||||    
T  24184040 tgtgtaat-----------gttagcaaatacactgtct-gaatttattttttatgcattttgtcactgtatctatcatttcccatt 24184113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 31125356 - 31125452
Alignment:
Q  269 aatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
    ||||||| ||| ||||| | |||||||||| ||||||||||| ||||||||| |||| | ||||| |||||| | |||||||||| |||||||||||    
T  31125356 aatcaagagagataatgatatgtaattaagaaaatgtgttaataaatacactatcttaagatttttttgatatagtttgtcactgaatctatcattt 31125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 5881505 - 5881435
Alignment:
Q  252 atttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    |||||||||||  |||||||||||| | |||||| |||||||||||||||| || ||| |||||| |||||    
T  5881505 atttgttatttaccggaaatcaaggaatgtaatgatgtgtaattaaggaaaggtattagcaaatatactgt 5881435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 367
Target Start/End: Original strand, 35458365 - 35458394
Alignment:
Q  338 ataaattttgtcactgtatctatcatttcc 367  Q
    ||||||||||||||||||||||||||||||    
T  35458365 ataaattttgtcactgtatctatcatttcc 35458394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 185 - 368
Target Start/End: Original strand, 35412993 - 35413176
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaat 284  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||||||| || ||   ||||||||||||||||||||||||||||||||||||||||    
T  35412993 agagaattgctatttatctagagagtttttatcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaagggaggtaat 35413092  T
Q  285 ggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
     ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||    
T  35413093 agtgtgtaattaaggaaaggtgttaacaaatacactctcttgaaattttcttgataaattttgtcattatatctatcatttccc 35413176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 195 - 368
Target Start/End: Original strand, 10061569 - 10061738
Alignment:
Q  195 tatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaat 294  Q
    |||||||||||| ||||||||||||||||||||||| |||| || ||   ||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  10061569 tatttatctagagagtttttatcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaat 10061668  T
Q  295 taaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    |||||||||||||||    
T  10061669 taaggaaatgtgttagcaaataaactgtcttgaaattttcttgataaattttgtc----tatctatcatttccc 10061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 184 - 368
Target Start/End: Original strand, 29657330 - 29657514
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||| ||||||||||||| || ||||||||| ||||  ||||||||| || ||   ||||||||||||||||||| || ||||||| ||||||||    
T  29657330 aagagcattcctatttatctagagagattttatcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaa 29657429  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    || | |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29657430 tgatatgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaaatttgtcactgtatctatcatttccc 29657514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 186 - 337
Target Start/End: Complemental strand, 43537288 - 43537134
Alignment:
Q  186 gagcattgctatttatctagaaagttttt---atcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggta 282  Q
    |||||||| |||||||||||| |||||||   |||||||||| |||||||||| || || | ||||||||||||||||||| ||||||||||||||||||    
T  43537288 gagcattgttatttatctagagagttttttttatcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaagggaggta 43537189  T
Q  283 atggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttg 337  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43537188 atggtgtgtaattaaagaaatgtgttaacaaatacactgtcttgaaattttcttg 43537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 195 - 365
Target Start/End: Complemental strand, 35149795 - 35149625
Alignment:
Q  195 tatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaat 294  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |    |||||||||||||||||||||  |||||||||||| ||||| ||| ||||    
T  35149795 tatttatctagagagtttttatcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataat 35149696  T
Q  295 taaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
    |||||||| |||||| |||||||| | |||||||||||| ||||||||||||||||||||| |||||||||    
T  35149695 taaggaaaggtgttagcaaatacattctcttgaaatttttttgataaattttgtcactgtacctatcattt 35149625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 184 - 331
Target Start/End: Original strand, 21540040 - 21540187
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| || | ||||||||||||||||||| ||||||| ||||||| |||    
T  21540040 aagagcattgctatttatttagagagtttttatcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataa 21540139  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaatt 331  Q
    ||  |||||||||| |||| ||||||||||||||||||||||||||||    
T  21540140 tgaagtgtaattaaagaaaggtgttaacaaatacactgtcttgaaatt 21540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 23906747 - 23906605
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaat 284  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| | ||||||||||||||||||| |  |||||||| ||||||||    
T  23906747 agagcattgctatttatctagaaaggttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttatttgccacaaatcaagagaggtaat 23906648  T
Q  285 ggtgtgtaattaaggaaatgtgttaacaaatacactgtcttga 327  Q
    ||||||||||||| |||| |||||| |||||||| ||||||||    
T  23906647 ggtgtgtaattaaagaaaggtgttagcaaatacattgtcttga 23906605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 26469927 - 26470082
Alignment:
Q  201 tctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaagga 300  Q
    |||||| ||||||||||||||||||||||||||||||| ||    |||||||||| |||||| | | ||||||| | || ||||||||||||||||||||    
T  26469927 tctagagagtttttatcaagaatttatcaagaaaatgtctcaacaaattaaatttattatttaatgaaaatcaaagaagataatggtgtgtaattaagga 26470026  T
Q  301 aatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtat 356  Q
    || |||||| |||||||||||| || |||||||||||||||||||| |||||||||    
T  26470027 aaggtgttagcaaatacactgttttaaaattttcttgataaattttatcactgtat 26470082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 184 - 368
Target Start/End: Original strand, 48852609 - 48852793
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||   |||||||||||||||||||     ||||||| | || |||    
T  48852609 aagagcattgttatttatctagagagtttttattaagaatttatcaaaaaaatgttttaatcaattaaatttgttatttagaaaaaatcaaagaagataa 48852708  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    || ||| |||||||| |||  |||||||||||||| ||| || ||| ||| ||||||||||||||||||| ||||||||||||||    
T  48852709 tgatgtataattaagaaaaaatgttaacaaatacattgttttaaaaattttttgataaattttgtcactggatctatcatttccc 48852793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 11470016 - 11470130
Alignment:
Q  210 tttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgtta 309  Q
    ||||||| ||||||||||||||||||| | |    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||    
T  11470016 tttttattaagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaatatgtta 11470115  T
Q  310 acaaatacactgtct 324  Q
    | ||||||| |||||    
T  11470116 agaaatacattgtct 11470130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 9113514 - 9113421
Alignment:
Q  273 aagggaggtaatggtgtgtaattaaggaaatgtgttaacaaa-tacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
    ||||||||||||| | |||||||||||||| || ||| |||| |||||| |||| |||||||||||||| ||||| ||||||||||||||||||    
T  9113514 aagggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaaattttcttgatatattttatcactgtatctatcattt 9113421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 49313575 - 49313663
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaa 274  Q
    ||||||||||||||||| | | ||||||||||||||||| ||||||||||||| ||  | |||||||||||||||| | ||||||||||    
T  49313575 gagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgttattagtcggaaatcaa 49313663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 13085144 - 13085089
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaaggga 278  Q
    |||||||||||||| | || ||||||||||||||||||||| ||||||||||||||    
T  13085144 tttatcaagaaaatatctcagtcaattaaatttgttatttgccggaaatcaaggga 13085089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 34475804 - 34475857
Alignment:
Q  316 acactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 369  Q
    |||||||||| |||||||||| ||| |||||||||||||||| |||||||||||    
T  34475804 acactgtcttaaaattttcttaatacattttgtcactgtatccatcatttccca 34475857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 49401987 - 49402047
Alignment:
Q  305 tgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
    ||||| |||||||| ||  ||||||| || |||||||||||||||||||||||||||||||    
T  49401987 tgttagcaaatacattggtttgaaatctttttgataaattttgtcactgtatctatcattt 49402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 4684518 - 4684599
Alignment:
Q  268 aaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtc 349  Q
    ||||||| |||| |||||||||||||||||||||| |||||| ||||||   ||| |  |||||||||||||  ||||||||    
T  4684518 aaatcaaaggagataatggtgtgtaattaaggaaaggtgttagcaaatatgttgtttgaaaattttcttgatgcattttgtc 4684599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 33077719 - 33077784
Alignment:
Q  250 aaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaat 315  Q
    ||||||| |||||| || |||||||| ||||||||| |||||||||||  |||||||||| |||||    
T  33077719 aaatttgatatttgccgaaaatcaagagaggtaatgatgtgtaattaaataaatgtgttagcaaat 33077784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 284
Target Start/End: Original strand, 47996658 - 47996743
Alignment:
Q  199 tatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaat 284  Q
    |||||||| ||||||||||   |||| ||| | |||||||||| ||||||||||||| ||||| |  |||||| ||||||||||||    
T  47996658 tatctagagagtttttatccgaaattgatccaaaaaatgtttcagtcaattaaatttcttattggctggaaattaagggaggtaat 47996743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 1062833 - 1062889
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggag 279  Q
    ||||||||||||||||||| | ||||||||||||||||| | || |||||| |||||    
T  1062833 tttatcaagaaaatgtttcagccaattaaatttgttattggccgaaaatcatgggag 1062889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 13085076 - 13085034
Alignment:
Q  326 gaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||    
T  13085076 gaaattttcttgatacattttgtcattgtatctattatttccc 13085034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 13085172 - 13085134
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaa 222  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  13085172 aagagcattgttatttatctagagagtttttatcaagaa 13085134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 44958520 - 44958465
Alignment:
Q  311 caaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||||||||| |||| |||||||||| ||| ||||||||||  |||||||||||||||    
T  44958520 caaatacactctcttcaaattttcttaatacattttgtcac--tatctatcatttccc 44958465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 183 - 365
Target Start/End: Original strand, 25493784 - 25493966
Alignment:
Q  183 gaagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggta 282  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || | |||||||||||||| |||| | |||||||| |||||||    
T  25493784 gaagagcattgctatttatctagagagtttttatcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggta 25493883  T
Q  283 atggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||    
T  25493884 atggtgtgtaattaaggaaatgtattaacaaatatactgtcttgaaattttctggatacatgttgtcactgtatctatcattt 25493966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 186 - 365
Target Start/End: Complemental strand, 30735461 - 30735282
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||    
T  30735461 gagcattgctatttatctagatagtttttattaagaatatatcaagaaaatgtctcaatcaattaaatttgttatttggcggaaatcaagggaggtaatg 30735362  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
     || ||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  30735361 ctgggtaattaagaaaaagtgttagcaaatacactgttttgaaattttcttgataaattttgtcactgtacctatcattt 30735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 186 - 368
Target Start/End: Complemental strand, 3040400 - 3040218
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||| ||  | ||||||||||||||||||    
T  3040400 gagcattgttatttacctagagagtttttatcaagaatttatcaagaaaatgtctcaatcaattaaatttgttatctggtgaaaatcaagggaggtaatg 3040301  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  3040300 gtgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaattttcttgataaattttgtcactgtgtctattatttccc 3040218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 186 - 369
Target Start/End: Complemental strand, 30701008 - 30700827
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||| |||||||||||||  ||||||||||| ||| ||| |||||||||| ||  ||||||||||||||||||||||| |||| |||||||||||||    
T  30701008 gagcatttctatttatctaga--gtttttatcaaaaatatattaagaaaatgtctcaatcaattaaatttgttatttgacgaaaattaagggaggtaatg 30700911  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 369  Q
     |||||||||||| ||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||    
T  30700910 ttgtgtaattaagaaaaggtgttagcaaatacactgtcttaaaatttttttgataaattttgtcactgcacctatcatttccca 30700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 185 - 369
Target Start/End: Original strand, 40519146 - 40519329
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaat 284  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| | || ||   |||||||||||||||||||| |||||||| ||||||||||    
T  40519146 agagcattgctatttatctagagagtttttatcaagaatttattaagaataagtctcaaccaattaaatttgttatttgatggaaatca-gggaggtaat 40519244  T
Q  285 ggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 369  Q
    | |||||||||||| |||  | ||  ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  40519245 gatgtgtaattaagaaaaaatattggcaaatacactgtcttaaaattttcttgataatttttgtcactgtatttatcatttccca 40519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 186 - 371
Target Start/End: Original strand, 30071739 - 30071924
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||||||||||||||| | |||||||||| |||||||| |||||||| || ||   ||||||||||| |||||||  |||||||| || ||||| ||    
T  30071739 gagcattgctatttatctaaagagtttttatctagaatttaacaagaaaaggtctcaaccaattaaatttattatttgttggaaatcatggaaggtagtg 30071838  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccatt 371  Q
    |||||||||| |||||| | |||| |||||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  30071839 gtgtgtaattgaggaaaggagttagcaaatacattgtcttaaaattttcttcataaattttgtcactctatctatcatttcccatt 30071924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 211 - 369
Target Start/End: Original strand, 20359904 - 20360064
Alignment:
Q  211 ttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgtta--tttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgtt 308  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||  |||  | |||||||| |||| ||||||||||||||||| |||| |||||    
T  20359904 ttttatcaagaattgatcaagaaaatgtctcggtcaattaaatctgttaaattttcctgaaatcaaaggagataatggtgtgtaattaaagaaaggtgtt 20360003  T
Q  309 aacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 369  Q
    | |||||| || ||||||||| |||||||||| | ||||||||| ||||||||||||||||    
T  20360004 agcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccca 20360064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 244 - 368
Target Start/End: Complemental strand, 34280188 - 34280064
Alignment:
Q  244 tcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaat 343  Q
    |||||||||||||||||||| ||||||| |||| || ||||||| ||||||||||||||  ||||||||||||||||| ||| |||| || |||||||||    
T  34280188 tcaattaaatttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatgttaacaaatacactgacttaaaatattattgataaat 34280089  T
Q  344 tttgtcactgtatctatcatttccc 368  Q
    | |||||||||||||||||||||||    
T  34280088 tctgtcactgtatctatcatttccc 34280064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 24402009 - 24402195
Alignment:
Q  187 agcattgctatttatctagaaagttttt---atcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttga-cggaaat-caagggaggt 281  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||||  | ||   ||| |||||||||||||||  ||||||| ||| ||||      
T  24402009 agcattgctatttatttagagagttttttttatcaagaatttatcaagaaaagatctcaaccaaataaatttgttatttggtcggaaatacaaaggagc- 24402107  T
Q  282 aatggtgtgtaattaaggaaatgtgttaacaaatacactgtc--ttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||| ||||||||||||||||  ||||||||| |||| |||   || |||||||||||||||||||||||| |||||||||||||||||    
T  24402108 aatgatgtgtaattaaggaaaactgttaacaa-tacaatgtactttaaaattttcttgataaattttgtcattgtatctatcatttccc 24402195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 21259184 - 21259301
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    |||||||||  |||||||||||| ||||||||||||||||| || ||||||| ||||  |  ||||||||||  |  | |||||||||||||||||||||    
T  21259184 aagagcatttatatttatctagagagtttttatcaagaattgataaagaaaaggtttaagctaattaaatttcatgctggacggaaatcaagggaggtaa 21259283  T
Q  284 tggtgtgtaattaaggaaa 302  Q
    ||| |||||||||||||||    
T  21259284 tgg-gtgtaattaaggaaa 21259301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 7547292 - 7547366
Alignment:
Q  244 tcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacac 319  Q
    ||||| ||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||| |||||||||    
T  7547292 tcaatcaaatttgttatttgacggaaatcaa-ggagataatgatttgtaattaaggaaatgtgttagcaaatacac 7547366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 35875876 - 35875763
Alignment:
Q  189 cattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtg 288  Q
    ||||||||||||| |||| || |||||||||||||| |||||| ||| ||||  | |||||||||||  | || | || |||| ||||||| |||||  |    
T  35875876 cattgctatttatttagagagattttatcaagaattgatcaaggaaaggtttaagccaattaaatttcatgttggccgaaaattaagggagataatgagg 35875777  T
Q  289 tgtaattaaggaaa 302  Q
    ||||||||||||||    
T  35875776 tgtaattaaggaaa 35875763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 9666951 - 9666899
Alignment:
Q  291 taattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaat 343  Q
    |||||| ||||| |||||| |||||||||  |||| |||||||||||||||||    
T  9666951 taattatggaaaggtgttagcaaatacaccatcttaaaattttcttgataaat 9666899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 191 - 367
Target Start/End: Complemental strand, 32871888 - 32871711
Alignment:
Q  191 ttgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtg 290  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||| |||||    
T  32871888 ttgctatttatctagagagtttttatcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaagggaggtaatagtgtg 32871789  T
Q  291 taattaaggaaatgtgttaacaaatacactgtctt-gaaattttcttgataaattttgtcactgtatctatcatttcc 367  Q
    ||||||||||||  |||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  32871788 taattaaggaaaaatgttagtaaatacactgtcttagaaattttcttgataaattttgtcattgtatctatcatttcc 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 184 - 368
Target Start/End: Original strand, 34713467 - 34713651
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||| ||    |||||||||||||||||| || ||||||||||| ||||    
T  34713467 aagagcattgctatttattcagagagtttttatcaagaatttatcaagaaattgtctcaactaattaaatttgttatttggcgaaaatcaagggatgtaa 34713566  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||||||||| ||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  34713567 tggtgtgtatttaagaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttgtcactgtatctatcatttccc 34713651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 186 - 370
Target Start/End: Complemental strand, 6784842 - 6784658
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||||||||||||||||| |||||||||||| |||||||||| ||||  | || | ||||||||||||||||||| ||||||||||||||| |||||    
T  6784842 gagcattgctatttatctagagagtttttatcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatg 6784743  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccat 370  Q
    ||||||||||||| ||| |||||| |||||||||| ||| ||||||||||||||  ||||||||||| |||||||||||||||||    
T  6784742 gtgtgtaattaagaaaaggtgttagcaaatacactatctcgaaattttcttgatgcattttgtcactatatctatcatttcccat 6784658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 184 - 366
Target Start/End: Complemental strand, 2130634 - 2130452
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    |||||||||| |||||||||||| |||||| || || |||||||||||||||  | ||   ||||||||||||||||||| |||||||||| |||||| |    
T  2130634 aagagcattgttatttatctagagagttttaataaaaaatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtga 2130535  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttc 366  Q
    | ||||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||| | | | |||||||||||||    
T  2130534 ttgtgtgtaattaaggaaaggtgttagcaaatacaccgttttgaaattttcttgataaattttatgattatatctatcatttc 2130452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 28867152 - 28867317
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaat 284  Q
    ||||||||| |||||||||| | || |||||||||||||| || ||||||| |||||  ||||||||||||||||||||  ||||||||| |||||||||    
T  28867152 agagcattgttatttatctaaagagattttatcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaaggaggtaat 28867251  T
Q  285 ggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtca 350  Q
     || ||||||||||||||||| ||| |||||||| ||||||||||||||||||||| | |||||||    
T  28867252 agtatgtaattaaggaaatgttttagcaaatacattgtcttgaaattttcttgatacaatttgtca 28867317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 254 - 370
Target Start/End: Complemental strand, 3855807 - 3855692
Alignment:
Q  254 ttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactg 353  Q
    |||||||||||||||||| |||||| |||||  |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  3855807 ttgttatttgacggaaattaagggatgtaataatgtgtaattaaggaaaggtgttagcaa-tacactgtcttgaaattttcttgataaattttgtcactg 3855709  T
Q  354 tatctatcatttcccat 370  Q
    |||||||||||||||||    
T  3855708 tatctatcatttcccat 3855692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 315
Target Start/End: Original strand, 6519233 - 6519337
Alignment:
Q  211 ttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaa 310  Q
    ||||||||| |||| ||||||||||||| || ||||||||||||||||||||| || ||||||| ||| |||||| |||||||||||| ||||| ||||     
T  6519233 ttttatcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgagttag 6519332  T
Q  311 caaat 315  Q
    |||||    
T  6519333 caaat 6519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 340
Target Start/End: Original strand, 11301808 - 11301958
Alignment:
Q  190 attgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgt 289  Q
    |||||||||||| |||| | ||||||||||||||| |||| ||||| || || ||||||| ||||||||||||  || ||||||||  ||||||| || |    
T  11301808 attgctatttatatagagaatttttatcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatttctcgaaaatcaagcaaggtaatagtat 11301907  T
Q  290 gtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgata 340  Q
     ||||||||||||  |||||  ||||||||| | || ||||||||||||||    
T  11301908 ataattaaggaaagatgttaggaaatacactattttaaaattttcttgata 11301958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 176 - 379
Target Start/End: Complemental strand, 21882919 - 21882718
Alignment:
Q  176 tatttttgaagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaag 275  Q
    ||||| ||||||||||||||||||||||||| || |||||| ||||||| || |||||||  | || | ||||||||||||||||||| |||||||||||    
T  21882919 tatttctgaagagcattgctatttatctagagagattttatgaagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaag 21882820  T
Q  276 ggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccatttttg 375  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |   | |||||| |||||||||||||||||||||    
T  21882819 ggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttctttataca--gtatcactggatctatcatttcccatttttg 21882722  T
Q  376 aatt 379  Q
    ||||    
T  21882721 aatt 21882718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 184 - 370
Target Start/End: Complemental strand, 23611891 - 23611706
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||    |||||||||||||||||||||||||||||| |||||||    
T  23611891 aagagaattactatttatctagagagtttttattaagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaagagaggtaa 23611792  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccat 370  Q
    |||  |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  23611791 tgga-tgtaattaagtaaaggtgttaacaaatacactgttttgaaattttcttgataaattttatcattgtatctatcatttcccat 23611706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 185 - 369
Target Start/End: Original strand, 20125557 - 20125741
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaat 284  Q
    |||||||| ||||||||||||| || |||||||||||||| ||||||||||||| || | ||||||||||||||| ||| | ||||| || | || ||||    
T  20125557 agagcatttctatttatctagagaggttttatcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataat 20125656  T
Q  285 ggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 369  Q
    ||||||||||||| |||| || ||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  20125657 ggtgtgtaattaaagaaaggtattagcaaatacactgtcttcaaattttcttgataaaatttgtcattgtatctatcatttccca 20125741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 223 - 368
Target Start/End: Complemental strand, 46413849 - 46413701
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttga---cggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacac 319  Q
    |||||||||||||||| ||   |||||||||||||||||||    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  46413849 tttatcaagaaaatgtctcaaccaattaaatttgttatttggtggcggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacac 46413750  T
Q  320 tgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||||||||||||| || ||||||||||||| |||||||||||||||||    
T  46413749 tgtcttgaaatttttttaataaattttgtcaatgtatctatcatttccc 46413701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 184 - 316
Target Start/End: Original strand, 46297579 - 46297711
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || | || || ||||||||||||| || |||||||||||| |||    
T  46297579 aagagcattactatttatctagagagtttttatcaagaatttatcaagaaaatgtctcagccattttaatttgttatttgtcgaaaatcaagggagttaa 46297678  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaata 316  Q
    |||||||||||||||||||||||||| ||||||    
T  46297679 tggtgtgtaattaaggaaatgtgttagcaaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 184 - 368
Target Start/End: Original strand, 8123657 - 8123841
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||||||||||||||||| || |||||||| ||||| ||||||||||||| || |||||||||||||||||||||  |||||| || |||| |||    
T  8123657 aagagcattgctatttatctagagagattttatcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatttgttggaaattaatggagataa 8123756  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |  ||| ||||||| |||| |||||| |||||| || ||| | ||||||||| |||| ||||||| ||| |||||||||||||||    
T  8123757 taatgtataattaaagaaaggtgttagcaaatataccgtcctaaaattttctggatacattttgttactatatctatcatttccc 8123841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 195 - 368
Target Start/End: Original strand, 19511387 - 19511560
Alignment:
Q  195 tatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaat 294  Q
    ||||||||| || || |||||||||||||| || ||||||| ||||  | ||||||||||| ||||||   ||||||||| |||| |||| ||| |||||    
T  19511387 tatttatctcgagagattttatcaagaattgattaagaaaaagttttagccaattaaatttattattttttggaaatcaatggagataatagtgagtaat 19511486  T
Q  295 taaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||||||| ||||||| ||||||||||||| |||||||| |||||||| ||| |||||| ||||||||||||||    
T  19511487 taaggaaaggtgttaataaatacactgtctcgaaatttttttgataaaatttatcactgcatctatcatttccc 19511560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 187 - 347
Target Start/End: Original strand, 22631449 - 22631609
Alignment:
Q  187 agcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatgg 286  Q
    ||||||| |||||||||| | |  |||||| ||||||| ||||||||||  | || | ||||||||||||||||||| |||||||||| |||| |||| |    
T  22631449 agcattgttatttatctaaagatattttattaagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatag 22631548  T
Q  287 tgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttg 347  Q
    |||||||||||||||| |||||| | ||||||| |||||||||||||||||||||| ||||    
T  22631549 tgtgtaattaaggaaaggtgttagctaatacaccgtcttgaaattttcttgataaagtttg 22631609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 23730640 - 23730507
Alignment:
Q  189 cattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtg 288  Q
    |||||||||||||| ||| || |||||||||||||| |||||||||| ||||| |  ||||||||| |||||||| ||||||||||| |||||||||  |    
T  23730640 cattgctatttatcgagagagattttatcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaagagaggtaatg--g 23730543  T
Q  289 tgtaattaaggaaatgtgttaacaaatacactgtct 324  Q
    |||||||||||||| |||||||||||||||||||||    
T  23730542 tgtaattaaggaaaggtgttaacaaatacactgtct 23730507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 1985033 - 1985128
Alignment:
Q  245 caattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgata 340  Q
    ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  1985033 caattaaatttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgttagcaaatacactatcttaaaattttcttgata 1985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 184 - 368
Target Start/End: Complemental strand, 24250596 - 24250418
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    |||||||||||||| |||||| | || |||||||||||||| ||||||||||  | |    ||||| ||||||||||||| |||||||||||||||||||    
T  24250596 aagagcattgctatctatctaaagagattttatcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaagggaggtaa 24250497  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||| |||||||||| |||  | |||  |||||| |||||||||||      ||||||| |||||||||||||| ||||||||||    
T  24250496 tggtttgtaattaagaaaagatattagtaaatacgctgtcttgaaa------tgataaaatttgtcactgtatcaatcatttccc 24250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 208 - 327
Target Start/End: Original strand, 44600998 - 44601109
Alignment:
Q  208 agtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgt 307  Q
    ||||||||||||||||||   |||||||||||||  |||||||||||||||||||| |        |||||| ||||| |||||||||||| ||||||||    
T  44600998 agtttttatcaagaatttgataagaaaatgtttcaatcaattaaatttgttatttggc--------agggagataatgatgtgtaattaagaaaatgtgt 44601089  T
Q  308 taacaaatacactgtcttga 327  Q
    || |||||||||||||||||    
T  44601090 tagcaaatacactgtcttga 44601109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 15127604 - 15127541
Alignment:
Q  312 aaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccatttttg 375  Q
    |||||||||||||| |||||||||||||| || |||||||| ||| ||||| || |||| ||||    
T  15127604 aaatacactgtcttaaaattttcttgatacatcttgtcactatatttatcaatttccatatttg 15127541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 21147142 - 21147078
Alignment:
Q  300 aaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatt 364  Q
    ||||||||||||||||||||| |||| |  |||| || ||||| ||||||| | |||||||||||    
T  21147142 aaatgtgttaacaaatacactatcttaattttttttttataaagtttgtcagtatatctatcatt 21147078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 184 - 370
Target Start/End: Original strand, 1632775 - 1632960
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    |||||| |||||||||||||||| | |||||||||| |||| ||||||||||||| ||    |||||||||||||||||  |||||||||| ||||||||    
T  1632775 aagagctttgctatttatctagagaatttttatcaaaaatt-atcaagaaaatgtctcaactaattaaatttgttattttgcggaaatcaaaggaggtaa 1632873  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccat 370  Q
    |||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  1632874 tggtgtgtaattaaagaaacgtgttaacaaatacactgtcttggaatttttttgataaattttgtcactgtatctatcatttcccat 1632960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 223 - 352
Target Start/End: Original strand, 26442954 - 26443083
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    ||||||||||||| || ||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  26442954 tttatcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgt 26443053  T
Q  323 cttgaaattttcttgataaattttgtcact 352  Q
    ||||||||||||||||||||||||||||||    
T  26443054 cttgaaattttcttgataaattttgtcact 26443083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 223 - 370
Target Start/End: Complemental strand, 18272066 - 18271919
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    |||||||||||||| | ||   ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||| ||||||| || |    
T  18272066 tttatcaagaaaatatctcaaccaattaaatttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctat 18271967  T
Q  323 cttgaaattttcttgataaattttgtcactgtatctatcatttcccat 370  Q
    ||| |||||||||||||||||||||||||| |||||||||||| ||||    
T  18271966 cttaaaattttcttgataaattttgtcactatatctatcattttccat 18271919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 186 - 368
Target Start/End: Original strand, 34905814 - 34905996
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||||||||||||||||| || |||||||||||||| || |||||||||| || | || |||||||||||||||| |  ||||||| ||||||||||    
T  34905814 gagcattgctatttatctagatagattttatcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatg 34905913  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
     ||| |||||||||||| |||||| ||||||||||||||| ||||||||| |||| | |||||   ||||||||| |||||||    
T  34905914 atgtataattaaggaaaggtgttagcaaatacactgtcttaaaattttctcgatacagtttgttgttgtatctataatttccc 34905996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 226 - 368
Target Start/End: Complemental strand, 1714078 - 1713936
Alignment:
Q  226 atcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtctt 325  Q
    ||||||||||| ||||  |||||||||||||||||||| ||||||| ||||||| |||| |||| |||||||| |||| |||||| ||||||||||||||    
T  1714078 atcaagaaaatatttcaatcaattaaatttgttatttggcggaaattaagggagataattgtgtataattaagaaaatatgttaataaatacactgtctt 1713979  T
Q  326 gaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||||||||| | ||||||||| ||||||||| |||||||||||    
T  1713978 gaaattttcctaataaattttatcactgtatttatcatttccc 1713936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 184 - 368
Target Start/End: Complemental strand, 45853076 - 45852892
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    |||||||||| |||||||||| | || |||||||||||||| |||||||||| || ||   ||||||||||| |||||||   | ||||||||||| |||    
T  45853076 aagagcattgttatttatctatagagattttatcaagaattaatcaagaaaaagtctcaaccaattaaatttattatttgcttgcaatcaagggagataa 45852977  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    || | |||||||||| ||| |||||| ||||||||| ||||| |||||||||||||| | ||||||||| |||||||||||||||    
T  45852976 tgatatgtaattaagaaaaggtgttagcaaatacacggtcttaaaattttcttgatacagtttgtcactttatctatcatttccc 45852892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 210 - 368
Target Start/End: Original strand, 2671895 - 2672053
Alignment:
Q  210 tttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgtta 309  Q
    ||||||||||||||| |||||||||| || || | ||||||||||||||||| |  | ||||||  |||| ||||| ||||||||||||||||  |||||    
T  2671895 tttttatcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgtta 2671994  T
Q  310 acaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||| | ||||||||    
T  2671995 acaaatacactgtcttaaaattttcttgatacattttgtcactttatcaagcatttccc 2672053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 195 - 368
Target Start/End: Complemental strand, 10593591 - 10593419
Alignment:
Q  195 tatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaat 294  Q
    ||||||| |||| || |||||||||||||||||| ||||||||| ||   ||||||||||||||||||  ||||  |||||  |  ||||||||| ||||    
T  10593591 tatttatttagagagattttatcaagaatttatccagaaaatgtctcaaccaattaaatttgttatttagcggat-tcaagaaaactaatggtgtataat 10593493  T
Q  295 taaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    || | ||| ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||    
T  10593492 taggaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttatcactgtatctatcttttccc 10593419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 184 - 368
Target Start/End: Complemental strand, 48897822 - 48897640
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||| |  | |||||||||||||||| || ||||||| |||  |||    
T  48897822 aagagcattgctatttatctagagagattttatcaagaattaatcaaaaaaatgtttcagcaagttaaatttgttatttgtcgaaaatcaatggaaataa 48897723  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||||||||||||||| |||  ||||| |||||| |||| |||||||  ||||||||| | |||||   |||| ||||||||||||    
T  48897722 tggtgtgtaattaagaaaagatgttagcaaatagactgccttgaaa--ttcttgatatagtttgttgttgtaactatcatttccc 48897640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 368
Target Start/End: Original strand, 31192085 - 31192209
Alignment:
Q  244 tcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaat 343  Q
    |||||||||||||||||||   | |||| ||| ||| |||| |||||||||||||||||  | ||| ||||||| ||||||| |||||||||||||| |     
T  31192085 tcaattaaatttgttatttattgaaaattaagagagataatagtgtgtaattaaggaaagatattagcaaataccctgtcttaaaattttcttgatacag 31192184  T
Q  344 tttgtcactgtatctatcatttccc 368  Q
    ||| |||||||||||||||||||||    
T  31192185 tttatcactgtatctatcatttccc 31192209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 342
Target Start/End: Complemental strand, 40840780 - 40840633
Alignment:
Q  194 ctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaa 293  Q
    |||||||| |||| | ||||||||||  ||||||||| ||||||||||    |||||||||| ||||||| |||||||||| |||||||||| ||| |||    
T  40840780 ctatttatttagagaatttttatcaaatatttatcaaaaaaatgtttcaactaattaaatttattatttggcggaaatcaaaggaggtaatgatgtataa 40840681  T
Q  294 ttaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaa 342  Q
    | || |||| | ||||||  ||||||| |||||||||||||||||||||    
T  40840680 tcaaagaaa-gagttaacctatacactctcttgaaattttcttgataaa 40840633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 3169382 - 3169272
Alignment:
Q  190 attgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgt 289  Q
    |||||||||||||||||  |||||||||||||||| |||||||||| ||||  | |||||||||||  |    | ||||||||||||| |||||||  ||    
T  3169382 attgctatttatctaga--gtttttatcaagaattgatcaagaaaaggtttaagccaattaaatttcatgaaggccggaaatcaagggcggtaatgaggt 3169285  T
Q  290 gtaattaaggaaa 302  Q
    |||||||||||||    
T  3169284 gtaattaaggaaa 3169272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 184 - 371
Target Start/End: Complemental strand, 38585230 - 38585043
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||  | |||||||||||| ||||| |||||||||| ||||||||    
T  38585230 aagagtattgatatttatttagagagtttttatcaagaatttatcaagaaaatgtttcaattaattaaatttgtcatttggcggaaatcaaaggaggtaa 38585131  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccatt 371  Q
    | |||||||||||| |||| |||||| |||||||| ||  ||||||||||||||||||||||||||| || |||||||||||||||||    
T  38585130 ttgtgtgtaattaaagaaaagtgttagcaaatacattgctttgaaattttcttgataaattttgtcattggatctatcatttcccatt 38585043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 186 - 368
Target Start/End: Original strand, 29414352 - 29414532
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    |||||||||||||||||||||  ||||||||||| |||| ||||||||||||| || | ||||||||||||||||||| || ||||||||| ||||||||    
T  29414352 gagcattgctatttatctaga--gtttttatcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatg 29414449  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    |||| |||||||||||| |||||||||||| |||||| ||||||||||||||||| ||||| |||  ||||||||||||||||    
T  29414450 gtgtttaattaaggaaaggtgttaacaaatgcactgttttgaaattttcttgatatattttatcaaggtatctatcatttccc 29414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 186 - 366
Target Start/End: Complemental strand, 5718595 - 5718407
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcgg--------tcaattaaatttgttatttgacggaaatcaaggg 277  Q
    |||||||| ||||||||| || || |||||||||||||| |||||||||| || || |        |||||||||||| ||||||| ||||||||||||     
T  5718595 gagcattggtatttatcttgagagattttatcaagaattgatcaagaaaaggtctcagactcttagtcaattaaatttattatttgtcggaaatcaagga 5718496  T
Q  278 aggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttc 366  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||| |||||||||||||||    
T  5718495 aggtaatggtgtgtaattaaggaaatgtgttagcaaatacactgtcttaaaattttcttgatatagtttgtcattgtatctatcatttc 5718407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 25124400 - 25124518
Alignment:
Q  248 ttaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttg 347  Q
    ||||| |||||||||| ||||||||||| ||| ||||| |||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||    
T  25124400 ttaaagttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaattttcttgataaattttg 25124499  T
Q  348 tcactgtatctatcatttc 366  Q
    |||||||||||||||||||    
T  25124500 tcactgtatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 186 - 366
Target Start/End: Complemental strand, 24068256 - 24068076
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||||||||||||||||| || |||||||||||||| ||| |||||| || || | ||||||||||||||||||| |  ||||||| |||||| |||    
T  24068256 gagcattgctatttatctagagagattttatcaagaattgatcgagaaaaagtctcagccaattaaatttgttatttg-ccaaaatcaaaggaggtgatg 24068158  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaataca-ctgtcttgaaattttcttgataaattttgtcactgtatctatcatttc 366  Q
    |||||||||||||||||  |||||  |||||||   ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  24068157 gtgtgtaattaaggaaagatgttaggaaatacagaagtcttaacattttcttaatacagtttgtcactgtatctatcatttc 24068076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 210 - 367
Target Start/End: Original strand, 33543341 - 33543494
Alignment:
Q  210 tttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgtta 309  Q
    |||||||||| ||||||| || ||||||| ||   |||| |||||||||||||| | ||||||||||||| ||||| |||||||||||  ||| ||||||    
T  33543341 tttttatcaaaaatttataaa-aaaatgtctcaaccaataaaatttgttatttggctgaaatcaagggagataatg-tgtgtaattaaaaaaaggtgtta 33543438  T
Q  310 acaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcc 367  Q
    ||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  33543439 acaaatatactgtcttgatattttcttgataaattttgtca--gtatctatcatttcc 33543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 5686372 - 5686276
Alignment:
Q  244 tcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgata 340  Q
    |||||||||||||||||||| ||||||||||||||||||||  | ||||||||| ||||||||||| ||||||| || |||||||||||||||||||    
T  5686372 tcaattaaatttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatgtgttagcaaatacgctatcttgaaattttcttgata 5686276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 322
Target Start/End: Complemental strand, 36947368 - 36947229
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaa--tgtttcggtcaattaaatttgttatttgacggaaatcaagggaggta 282  Q
    ||||||||| |||||||||||| || |||||||||||||| || || ||||  ||| ||  |||||||||||||||||| | |  |||| ||||||||||    
T  36947368 agagcattgttatttatctagagagattttatcaagaattgataaaaaaaaaatgtatcaatcaattaaatttgttattggccaaaaatgaagggaggta 36947269  T
Q  283 atggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    ||| ||| ||||||| |||||||||||| |||||||||||    
T  36947268 atgatgtataattaaagaaatgtgttaataaatacactgt 36947229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 188 - 301
Target Start/End: Original strand, 35393710 - 35393823
Alignment:
Q  188 gcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggt 287  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||  ||||  | ||||| |||||  ||||   || |||||||||||||||||||     
T  35393710 gcattgctatttatctagagagtttttatcaagaattgatcaagaaagagtttaagccaattgaatttcatattgaccgaaaatcaagggaggtaatggg 35393809  T
Q  288 gtgtaattaaggaa 301  Q
    ||||||||||||||    
T  35393810 gtgtaattaaggaa 35393823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 26415557 - 26415666
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    ||||||||||||| || ||   ||||||||||| ||||||||||||||| ||  ||| ||||| |||||||||||||||| || ||| |||||| ||| |    
T  26415557 tttatcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggtattagcaaatatactat 26415656  T
Q  323 cttgaaattt 332  Q
    ||| ||||||    
T  26415657 cttaaaattt 26415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 29543753 - 29543676
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttattt 262  Q
    ||||||||| |||||||| ||| |||||||||||| |||||||||||||||| | ||   ||||||||||||||||||    
T  29543753 agagcattgttatttatcaagagagtttttatcaaaaatttatcaagaaaatatctcaaccaattaaatttgttattt 29543676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 368
Target Start/End: Complemental strand, 43063955 - 43063810
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    |||||||| |||| || || ||||||||||||| |||||||  | |||||||   |||||||| ||| |||||||  |||  | |||||||||||| | |    
T  43063955 tttatcaaaaaaaggtctcagtcaattaaatttattatttgttgaaaatcaaataaggtaatgatgtataattaaaaaaagatattaacaaatacattat 43063856  T
Q  323 cttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||  |||||||||| ||| ||||||||  |||||||||||||||||    
T  43063855 ctcaaaattttcttaatacattttgtcgatgtatctatcatttccc 43063810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 370
Target Start/End: Complemental strand, 29543679 - 29543651
Alignment:
Q  342 attttgtcactgtatctatcatttcccat 370  Q
    |||||||||||||||||||||||||||||    
T  29543679 attttgtcactgtatctatcatttcccat 29543651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 9e-56; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 189 - 365
Target Start/End: Complemental strand, 42504328 - 42504155
Alignment:
Q  189 cattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtg 288  Q
    |||||||||||||||||| |||||||||   ||||| ||||||||||  ||||   ||||||||||||||||||| ||||||||||||||||||||| ||    
T  42504328 cattgctatttatctagagagtttttat---gaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatg 42504232  T
Q  289 tgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  42504231 tgtaattaaggaaaggtgttaacaaatacactgtcttaaaattttcttgatacattttgtcattgtatctatcattt 42504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 184 - 367
Target Start/End: Original strand, 37762771 - 37762956
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggt--caattaaatttgttatttgacggaaatcaagggaggt 281  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||||||   |     |||||||||||||||||||||| || |||| |||  |    
T  37762771 aagagcattgctatttatctaaagagttttcatcaagaatttatcaagaaaatgccacacaaccaattaaatttgttatttgacgaaagtcaaaggaaat 37762870  T
Q  282 aatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcc 367  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  37762871 aatgatgtgtaattaaggaaaagtgttaacaaatacattgtcttgaaatttttttgataaattttgtcactctatctatcatttcc 37762956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 211 - 369
Target Start/End: Original strand, 5288515 - 5288673
Alignment:
Q  211 ttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaa 310  Q
    |||||| ||||||| || |||||||||| || | ||||||||||||||||||| || |||||||||||| |||||||||||||||||  ||||||||||     
T  5288515 ttttattaagaattgattaagaaaatgtctcagccaattaaatttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaatgtgttag 5288614  T
Q  311 caaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 369  Q
    |||||| || ||||||||| |||||||||| | ||||||||| ||||||||||||||||    
T  5288615 caaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccca 5288673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 185 - 371
Target Start/End: Original strand, 24060543 - 24060727
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaat 284  Q
    ||||||||| |||||||||| | | ||||||||||||||| ||||||||||||| |  |  |||||||||||||||| |   ||||||||||||| ||||    
T  24060543 agagcattgttatttatctaaagaatttttatcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataat 24060642  T
Q  285 ggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccatt 371  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||||| ||| |  ||||||||||| | | |||||||||||    
T  24060643 ggtgtgtaattaaggaaatgtgttagcaaatacactgttttaaaattttcttaataca--ttgtcactgtaccaagcatttcccatt 24060727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 185 - 370
Target Start/End: Original strand, 16528530 - 16528718
Alignment:
Q  185 agagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggta-- 282  Q
    |||| ||||||||||||||||| || ||||||  |||||| ||||| | || || || | ||||||||||||||||||| ||||||||||  ||  ||      
T  16528530 agagtattgctatttatctagagagattttatttagaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaatgatatatt 16528629  T
Q  283 -atggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccat 370  Q
     ||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| || ||||| ||||||||||||||||||||    
T  16528630 aatggtgtgtaattaaagaaatgtgttaacaaatacactatcttaaaattttcttgatacatgttgtcgctgtatctatcatttcccat 16528718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 19482490 - 19482611
Alignment:
Q  190 attgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgt 289  Q
    ||||||||||||||||| ||||||  | ||||||||||||||||||| ||||   ||||||||||||||||||| |||||||||||||| ||||||||||    
T  19482490 attgctatttatctagagagttttatttaagaatttatcaagaaaatttttcaaccaattaaatttgttatttggcggaaatcaagggaagtaatggtgt 19482589  T
Q  290 gtaattaaggaaatgtgttaac 311  Q
    ||||||||||||| ||||||||    
T  19482590 gtaattaaggaaaggtgttaac 19482611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 25817658 - 25817756
Alignment:
Q  211 ttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgtta 309  Q
    |||||||||||||| |||||||||| || || | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  25817658 ttttatcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaagtgaggtaatggtgtgtaattaagaaaatgtgtta 25817756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 245 - 357
Target Start/End: Original strand, 30220727 - 30220838
Alignment:
Q  245 caattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaatt 344  Q
    ||||||| ||||||||| | ||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| |||    
T  30220727 caattaattttgttattggccggaaatcaagggag-tattggtgtgtaattaaggaaaagtgttagcaaatacactgtcttaaaattttcttgatacatt 30220825  T
Q  345 ttgtcactgtatc 357  Q
    ||||||| |||||    
T  30220826 ttgtcaccgtatc 30220838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 29065381 - 29065277
Alignment:
Q  223 tttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgt 322  Q
    ||||||||||||| || ||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| ||| ||| ||    
T  29065381 tttatcaagaaaaagtctcaatcaattaaatttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttaactaatgcaccgt 29065282  T
Q  323 cttga 327  Q
    |||||    
T  29065281 cttga 29065277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 19663341 - 19663432
Alignment:
Q  273 aagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
    ||||||||||||| |||||||||||| ||| ||    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  19663341 aagggaggtaatgatgtgtaattaagaaaaggt----acaaatacactctcttaaaattttcttgataaattttgtcactgtatctatcatttccc 19663432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 41545383 - 41545514
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||| ||||||||||||| |||||  ||||||||||||||||||||| |  ||   ||||||||||||||||||| | |||||| | | |||||||     
T  41545383 gagcattactatttatctagagagtttccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatttggcagaaatcgaagaaggtaatt 41545482  T
Q  286 gtgtgtaattaaggaaatgtgttaacaaatac 317  Q
    |||||||||||| |||| |||||| |||||||    
T  41545483 gtgtgtaattaatgaaaggtgttagcaaatac 41545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 308
Target Start/End: Complemental strand, 42108826 - 42108705
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    |||| ||| |||||||||||||| ||||||||||||||| |||||||||| ||||| | ||||||||||||||||| |||| ||||| | ||||| ||||    
T  42108826 gagcgttgttatttatctagaaattttttatcaagaattgatcaagaaaaagtttcagccaattaaatttgttattagacgaaaatc-atggaggcaatg 42108728  T
Q  286 gtgtgtaattaaggaaatgtgtt 308  Q
    |  ||||||| |||||| |||||    
T  42108727 ggatgtaatttaggaaaggtgtt 42108705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 51304429 - 51304300
Alignment:
Q  195 tatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaat 294  Q
    |||||||||||| ||||||||| |||||| ||| |||||||| |  |  ||||||||||||||||||||||||||||||| |||| |||||| ||| |||    
T  51304429 tatttatctagagagtttttattaagaatatat-aagaaaatatcacaatcaattaaatttgttatttgacggaaatcaaaggagataatggcgtgcaat 51304331  T
Q  295 taaggaaatgtgttaacaaatacactgtctt 325  Q
    |||  |||| ||||| |||||||| ||||||    
T  51304330 taaaaaaatatgttagcaaatacattgtctt 51304300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 19482799 - 19482855
Alignment:
Q  304 gtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctat 360  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19482799 gtgttaacaaataaactgtcttgaaattttcttgataaattttgtcactgtatctat 19482855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 19663335 - 19663274
Alignment:
Q  304 gtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 365  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  19663335 gtgttaacaaatacactgtcttgacattttttttataaattttgtcactgtatctatcattt 19663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 186 - 368
Target Start/End: Complemental strand, 2765505 - 2765328
Alignment:
Q  186 gagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatg 285  Q
    ||||||||||||||||   || ||||||||| |||| || |||||||||| || |  | ||||||||||||||||| | |  |||||| ||||| |||||    
T  2765505 gagcattgctatttat---gagagtttttattaagagttgatcaagaaaaggtctaagccaattaaatttgttattggccaaaaatcatgggagataatg 2765409  T
Q  286 gtgtgtaattaaggaaatgtgtt-aacaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 368  Q
     ||||||||||| |||| ||||| || ||||||| |||||||||   || |||||| ||||||||||| |||| | ||||||||    
T  2765408 atgtgtaattaatgaaaggtgttaaaaaaatacagtgtcttgaa---tttttgatacattttgtcactatatcaagcatttccc 2765328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 13218422 - 13218500
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttg 263  Q
    |||||||||||||||||| | || ||||||||| || ||||||| ||||||| || ||||||||||||||||||||||||    
T  13218422 aagagcattgctatttattt-gagagtttttattaaaaatttattaagaaaaggtctcggtcaattaaatttgttatttg 13218500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 298
Target Start/End: Original strand, 41485716 - 41485817
Alignment:
Q  197 tttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaatta 296  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||  | |||||||||||  |  | |  |||||| |||||||||||||| |||||||||    
T  41485716 tttatctagagagtttttatcaagaattgatcaagaaaaggtttaagccaattaaattttctgctggcaggaaattaagggaggtaatggggtgtaatta 41485815  T
Q  297 ag 298  Q
    ||    
T  41485816 ag 41485817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 33883101 - 33883167
Alignment:
Q  187 agcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatt 254  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||||||||||  | ||||||||||    
T  33883101 agcattgctatt-atctaaaaagtttttatcaagaattgatcaagaaaatgtttaagccaattaaatt 33883167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 368
Target Start/End: Complemental strand, 27180 - 27067
Alignment:
Q  255 tgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgt 354  Q
    ||||||||| ||||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgt 27081  T
Q  355 atctatcatttccc 368  Q
    ||||||||||||||    
T  27080 atctatcatttccc 27067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 184 - 368
Target Start/End: Original strand, 18600 - 18786
Alignment:
Q  184 aagagcattgctatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaa 283  Q
    ||||||||||||||||||||| | || |||||| ||||||| |||||||||| || |  ||||||||||||||||||||| || |||| ||||||| |||    
T  18600 aagagcattgctatttatctaaagagattttattaagaattgatcaagaaaaagtcttagtcaattaaatttgttatttgtcgaaaattaagggagataa 18699  T
Q  284 tggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaa-attttcttgataaattttgtcactg-tatctatcatttccc 368  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||  |||| |||||||| ||| ||| || || ||||||||||||    
T  18700 tggtgagtaattaaggaaatgtgttagcaaatacactgttttgaatttttttttgataaaatttatcattgataactatcatttccc 18786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 70056 - 69949
Alignment:
Q  195 tatttatctagaaagtttttatcaagaatttatcaagaaaatgtttcggtcaattaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaat 294  Q
    |||||||||||| |||||||||| | |||| |||||||||| ||||| | ||||||||||||||||| | ||||||||||||||| |||||| |||||||    
T  70056 tatttatctagagagtttttatctaaaattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaat 69957  T
Q  295 taaggaaa 302  Q
    ||||||||    
T  69956 taaggaaa 69949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 19220 - 19339
Alignment:
Q  248 ttaaatttgttatttgacggaaatcaagggaggtaatggtgtgtaattaaggaaatgtgttaacaaatacactgtcttgaaattttcttgataaattttg 347  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||  ||||  ||| || ||||||||||||| | ||| |||||||||| ||||||||      
T  19220 ttaaatttgttatttgacggaaatcaaaggaggtaatagtgtgtcgttaaaaaaaggtattaacaaatacacagacttaaaattttcttaataaatttga 19319  T
Q  348 tcactgtatctatcatttcc 367  Q
    ||||  ||||||||||||||    
T  19320 tcacaatatctatcatttcc 19339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University