View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19035_low_5 (Length: 396)
Name: NF19035_low_5
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19035_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 379
Target Start/End: Original strand, 31654939 - 31655316
Alignment:
| Q |
2 |
aataaaactaaacactcctccaccaactcgatctcaatctctaacaaacaaatttcttctccgactccaacaacctctctcaacactactacctaatatc |
101 |
Q |
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| T |
31654939 |
aataaaactaaacactcctccaccaactcgatctcaatctctaacaaacaaatttcttctccg-ctccaacaacctctctcaacactactacataatatc |
31655037 |
T |
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| Q |
102 |
atattcctcacaaaacattgttttatccaaacgctagattaaacaacccacttaaatgaaatggatacatgcaaattgcaaagcaaacagtttggattag |
201 |
Q |
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| T |
31655038 |
atattcctcacaaaacatttttttatccaaacgctagattaaacaacccacctaaatgaaatggatacatgcaaattgcaaagcaaacagtttggattag |
31655137 |
T |
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| Q |
202 |
aatggcatataccaattgtttggtgcatcacttatcgttttgtctgctggttctaacaaaatgccctcaagtctttgcattgtttatttctgtttcaaca |
301 |
Q |
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| T |
31655138 |
aatggcatataccaattgtttggtgcatcacttatcgttttgtctgctggttctaacaaaataccctcaagtctttgcattgtttatttctgtttcaaca |
31655237 |
T |
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| Q |
302 |
atagtatattttatttatcaaactttgagg--nnnnnnntgtatattttatgaacacattaaccacactacgttgaccat |
379 |
Q |
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| T |
31655238 |
atagtatattttatttatcaaactttgaggaaaaaaaaatgtatattttatgaacacatt-accacactacgttgaccat |
31655316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 44597669 - 44597736
Alignment:
| Q |
45 |
acaaacaaatttcttctccgactccaacaacctctctcaacactactacctaatatcatattcctcac |
112 |
Q |
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| T |
44597669 |
acaaacaaatttcttctccccctccaacaatctcactcaacaccaatacctaacatcatattcttcac |
44597736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 21462633 - 21462584
Alignment:
| Q |
48 |
aacaaatttcttctccgactccaacaacctctctcaacactactacctaa |
97 |
Q |
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| T |
21462633 |
aacaaatttcttctgtaactccaacaacctctttcaacactattacctaa |
21462584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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