View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19035_low_6 (Length: 390)
Name: NF19035_low_6
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19035_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 51211846 - 51211487
Alignment:
| Q |
11 |
cagagaggacaagaagaggaatagacgatagaaggacaagggttagaagccaacccaagatgaatgccacaactaaacctcctaaaaaacatgacacata |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211846 |
cagagaggacaagaagaggaatagacgatagaaggacaagggttaaaagccaacccaagatgaatgccacaactaaacctcctaaaaaacatgacacata |
51211747 |
T |
|
| Q |
111 |
ttgtatgaattttcctacctgcagaacatatatatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatg |
210 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211746 |
ttgtatgaattttcctacctgcagaacatat----ccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatg |
51211651 |
T |
|
| Q |
211 |
atgctgcattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211650 |
atgctgcattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaag |
51211551 |
T |
|
| Q |
311 |
aaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctct |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211550 |
aaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctct |
51211487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 374
Target Start/End: Complemental strand, 51198118 - 51197961
Alignment:
| Q |
217 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
316 |
Q |
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|||| ||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| |||| |||||||| ||||||||||| |
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| T |
51198118 |
cattaataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactc |
51198019 |
T |
|
| Q |
317 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctct |
374 |
Q |
| |
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| ||||||||| ||||||| || ||||||||| || ||||||||||||||||||| |
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| T |
51198018 |
acatcttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctct |
51197961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 374
Target Start/End: Complemental strand, 51155603 - 51155446
Alignment:
| Q |
217 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
316 |
Q |
| |
|
|||| ||||||| || |||||||| |||| ||| |||| ||||||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| || |
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| T |
51155603 |
cattgataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctc |
51155504 |
T |
|
| Q |
317 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctct |
374 |
Q |
| |
|
| ||||||||| ||||||| ||| |||||||| | || ||||||||| |||||||| |
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|
| T |
51155503 |
acatcttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctct |
51155446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 222 - 374
Target Start/End: Complemental strand, 51144458 - 51144306
Alignment:
| Q |
222 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatc |
321 |
Q |
| |
|
||||||| || |||||||| || | ||||||||| ||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||| | ||| |
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| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
51144359 |
T |
|
| Q |
322 |
ttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctct |
374 |
Q |
| |
|
|||||| ||||||| ||| || ||||| | || ||||||||| |||||||| |
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|
| T |
51144358 |
ttgcctcaaaattgttttaagatataaccctctaattcttgcactctgtctct |
51144306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 29938480 - 29938637
Alignment:
| Q |
217 |
cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg |
316 |
Q |
| |
|
|||| ||||||| || |||||||| |||| ||||||||| || ||||||| ||| |||||||||||||| ||| | || ||||| || ||||| || || |
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| T |
29938480 |
cattgataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc |
29938579 |
T |
|
| Q |
317 |
atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctct |
374 |
Q |
| |
|
| ||||||||| ||||||| ||| |||||||| | || ||||||||| |||||||| |
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|
| T |
29938580 |
acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctct |
29938637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 49738326 - 49738687
Alignment:
| Q |
11 |
cagagaggacaagaagaggaatagacgatagaaggacaagggttagaagccaacccaagatgaatgccacaactaaacctcctaaaaaacatgacacata |
110 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
49738326 |
cagagaggacaagaagaggaagagaagatagaaggacaaggcttagaagccaacccttgatgaatgcaacaactaaacctcctaaaaaagatgacacata |
49738425 |
T |
|
| Q |
111 |
ttgtatgaattttcctacctgcagaacatatatatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatg |
210 |
Q |
| |
|
|||||||||||||||||||| |||| |||| | |||||||||||||||| || |||||| | | || |||||||||| ||||||||||||| |
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| T |
49738426 |
ctgtatgaattttcctacctg-agaagatat----cacccaaaaaaggaagaataagctattat---ccttaaaacttgttatcatagttagatcaaatg |
49738517 |
T |
|
| Q |
211 |
atgctgcattcata------ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttg |
304 |
Q |
| |
|
|| |||||| ||| |||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||| || |
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|
| T |
49738518 |
attatgcattaatagaaataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaacctcaacactgtttgtttccctg |
49738617 |
T |
|
| Q |
305 |
tcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctct |
374 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |
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|
| T |
49738618 |
tcaaagaagcttatatcttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctct |
49738687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 36284848 - 36284720
Alignment:
| Q |
223 |
taccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgt---ttccttgtcaaagaaactgata |
319 |
Q |
| |
|
|||||| || ||||| || ||||||||||||| ||| |||| |||||| |||||||||||||| ||| |||| || |||| |||||||||| || || |
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|
| T |
36284848 |
taccttctcacccattgcatcttgaataagaattgtgtcacttgacatccttccaacaacctcgccagtattagtttcttccatgtcaaagaagctcgta |
36284749 |
T |
|
| Q |
320 |
tcttgccttaaaattgctttgaggtataa |
348 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |
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|
| T |
36284748 |
tcttgcctcaaaattgctctgaggtataa |
36284720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 372
Target Start/End: Original strand, 38527178 - 38527331
Alignment:
| Q |
219 |
ttcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgat |
318 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || || | |||||||| || ||||||||| | | |
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|
| T |
38527178 |
ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac |
38527277 |
T |
|
| Q |
319 |
atcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct |
372 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| |
|
|
| T |
38527278 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct |
38527331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 372
Target Start/End: Original strand, 38568478 - 38568632
Alignment:
| Q |
218 |
attcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactga |
317 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || | ||| || || | |||||||| || ||||||||| | | |
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|
| T |
38568478 |
attcataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaa |
38568577 |
T |
|
| Q |
318 |
tatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct |
372 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| |
|
|
| T |
38568578 |
catcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct |
38568632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 5821219 - 5821153
Alignment:
| Q |
225 |
ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccact |
291 |
Q |
| |
|
|||| ||||||||||| |||||||| |||| |||||||| ||||||||||||| |||||| ||||| |
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|
| T |
5821219 |
ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccact |
5821153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 5764298 - 5764242
Alignment:
| Q |
222 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaa |
278 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| ||| ||||| |||||||| |||| |
|
|
| T |
5764298 |
ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaa |
5764242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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