View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19035_low_8 (Length: 321)

Name: NF19035_low_8
Description: NF19035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19035_low_8
NF19035_low_8
[»] chr3 (1 HSPs)
chr3 (12-305)||(40692499-40692792)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 40692792 - 40692499
Alignment:
Q  12 atgaaactgggcaagataaaaatcaaacctttattnnnnnnnttctggttaattaattaatcagatacatgcatgatgatgaaaccatgaaagagtaaaa 111  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40692792 atgaaactgggcaagataaaaatcaaacctttattaaattttttctggttaattaattaatcagatacatgcatgatgatgaaaccatgaaagagtaaaa 40692693  T
Q  112 caaaaaatgatagttaaggaagcgacaattaccagtttagaagataaagccaaatttttggcctctaatttaggttctttgtaataatttttagggtgtt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40692692 caaaaaatgatagttaaggaagcgacaattaccagtttagaagataaagccaaatttttggcctctaatttaggttctttgtaataatttttagggtgtt 40692593  T
Q  212 tggaatacagagaagcgtgcttctctgaaattggtgtagtgaggggaaagaagactatatagcgtgaagagaaacgagaaagaggggaagaaac 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40692592 tggaatacagagaagcgtgcttctctgaaattggtgtagtgaggggaaagaagactatatagcgtgaagagaaacgagaaagaggggaagaaac 40692499  T

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