View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19036_low_1 (Length: 749)

Name: NF19036_low_1
Description: NF19036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19036_low_1
NF19036_low_1
[»] chr4 (8 HSPs)
chr4 (215-733)||(47863461-47863979)
chr4 (218-399)||(56083445-56083616)
chr4 (218-304)||(5169489-5169574)
chr4 (328-399)||(12862605-12862676)
chr4 (328-399)||(6658647-6658718)
chr4 (218-304)||(51569911-51569996)
chr4 (218-303)||(12862505-12862590)
chr4 (328-369)||(16312768-16312809)
[»] chr3 (12 HSPs)
chr3 (548-733)||(19470545-19470730)
chr3 (218-421)||(11151385-11151579)
chr3 (218-304)||(39606429-39606514)
chr3 (218-304)||(54673439-54673524)
chr3 (479-531)||(19470728-19470780)
chr3 (218-309)||(48538031-48538122)
chr3 (226-304)||(37086539-37086609)
chr3 (218-297)||(52092684-52092763)
chr3 (448-478)||(48537852-48537882)
chr3 (448-477)||(14997027-14997056)
chr3 (448-477)||(39605584-39605613)
chr3 (328-369)||(46652821-46652862)
[»] chr1 (10 HSPs)
chr1 (226-414)||(24304110-24304288)
chr1 (218-304)||(13970788-13970874)
chr1 (218-274)||(51676137-51676193)
chr1 (328-399)||(51676228-51676299)
chr1 (218-304)||(35712624-35712709)
chr1 (338-422)||(24302999-24303083)
chr1 (338-414)||(9010960-9011035)
chr1 (331-366)||(30232644-30232679)
chr1 (328-399)||(35712544-35712615)
chr1 (218-304)||(41669692-41669779)
[»] chr8 (6 HSPs)
chr8 (218-422)||(40462337-40462532)
chr8 (218-274)||(9755878-9755934)
chr8 (328-399)||(9755775-9755846)
chr8 (328-399)||(26521893-26521964)
chr8 (218-269)||(38974605-38974656)
chr8 (218-269)||(39005703-39005754)
[»] scaffold0262 (1 HSPs)
scaffold0262 (218-422)||(2825-3018)
[»] chr5 (1 HSPs)
chr5 (328-399)||(27491167-27491238)
[»] chr6 (3 HSPs)
chr6 (229-299)||(12605064-12605133)
chr6 (226-300)||(21511668-21511742)
chr6 (221-299)||(25482329-25482406)
[»] chr7 (3 HSPs)
chr7 (218-299)||(7849054-7849133)
chr7 (218-303)||(23526559-23526644)
chr7 (218-303)||(47578402-47578486)
[»] chr2 (1 HSPs)
chr2 (338-369)||(29043524-29043555)
[»] scaffold0408 (1 HSPs)
scaffold0408 (448-478)||(10087-10117)
[»] scaffold0061 (1 HSPs)
scaffold0061 (383-421)||(11202-11240)


Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 215 - 733
Target Start/End: Original strand, 47863461 - 47863979
Alignment:
Q  215 aacttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccacatcagtcagc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  47863461 aacttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaa-ttatgacgtgtcagtgccacatcagtcagc 47863559  T
Q  315 gtgccacatcatcacacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatggcgagggg-a 413  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  47863560 gtgccacatcatcacacagttagcgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatgacgaggggga 47863659  T
Q  414 atctccaagnnnnnnnnnnnccgtagggggtaaaccaaatggcaggg--gtaaaagcctattaaccccacattaattcatcaaaagtgcttcaacagcaa 511  Q
    |||||||||           |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  47863660 atctccaagttttttttt--ccgtagggggtaaaccaaatggcagggaggtaaaagcctattaaccccgcattaatttatcaaaagtgcttcaacagcaa 47863757  T
Q  512 cactgtaccaaattaacatttcatacttattttacaattggacaaatttataatagtaaccaattcaaatttccattccagtacataaatgctaatatca 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47863758 cactgtaccaaattaacatttcatacttattttacaattggacaaatttataatagtaaccaattcaaatttccattccagtacataaatgctaatatca 47863857  T
Q  612 attctataaagtaaaactgattggtttcctttagtttggacaaaatttaaactatggcaggttcatacctttgttaatagtttaattgagcaatcaaaac 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47863858 attctataaagtaaaactgattggtttcctttagtttggacaaaatttaaactatggcaggttcatacctttgttaatagtttaattgagcaatcaaaac 47863957  T
Q  712 cgattgcttgcaagtaagtttg 733  Q
    ||||||||||||||||||||||    
T  47863958 cgattgcttgcaagtaagtttg 47863979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 218 - 399
Target Start/End: Complemental strand, 56083616 - 56083445
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccacatcagtcagcgtg 317  Q
    ||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||| || || ||| ||||| |||||| |||||| |||             
T  56083616 ttatcattaagggtatttttggtatttcacatttttaacatacttttaaaaaaaaaaaatatataaaatatgatatgtcaatgccacttca--------- 56083526  T
Q  318 ccacatcatcacacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
     | |||||  ||||||| | |||||||||||| ||||||||||||||||||| || | || |||||||||||||||||||||    
T  56083525 -ctcatcactacacagtcagcgtgccacatcaactcattaatccagtcagatggcatcagagttgaaaatcaaagaatcttc 56083445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 5169574 - 5169489
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccac 304  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |  ||||||||||||| ||||||||||||    
T  5169574 ttatcattaggggtattttaggtatttcacatttttaacataattttaaaaataaaa-aaataaaaattatgacgtgtcagtgccac 5169489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 12862605 - 12862676
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
    ||||||| | ||||||||||||||||||||||||||||||||  | | ||||||||||||||||||||||||    
T  12862605 acacagtcagcgtgccacatcagctcattaatccagtcagatgacatcagggttgaaaatcaaagaatcttc 12862676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 6658647 - 6658718
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
    ||||||| | ||||||||||||||||||||||||||||||||  | |  |||||||||||||||||||||||    
T  6658647 acacagtcagcgtgccacatcagctcattaatccagtcagatgacatccgggttgaaaatcaaagaatcttc 6658718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 51569911 - 51569996
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccac 304  Q
    ||||||| | ||||||| |||||||||||| ||   ||||| ||||||||||| ||| |||||||||||||||| ||||||||||||    
T  51569911 ttatcattaagggtattctgggtatttcactttccaaacattcttttaaaaattaaa-atttaaaaattatgacgtgtcagtgccac 51569996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 12862505 - 12862590
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacattttt-aacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgcca 303  Q
    ||||||| | |||| |||| |||||||||| ||||| |||||  |||||||||||||| ||  |||||||||||| |||||||||||    
T  12862505 ttatcattaagggtgttttaggtatttcactttttttaacattattttaaaaataaaaaata-aaaaattatgacgtgtcagtgcca 12862590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 16312809 - 16312768
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagat 369  Q
    ||||||| | |||||||||||| |||||||||||||||||||    
T  16312809 acacagtcagcgtgccacatcatctcattaatccagtcagat 16312768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 7e-79; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 548 - 733
Target Start/End: Complemental strand, 19470730 - 19470545
Alignment:
Q  548 attggacaaatttataatagtaaccaattcaaatttccattccagtacataaatgctaatatcaattctataaagtaaaactgattggtttcctttagtt 647  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||  ||||||| ||||||||||||||| | |||||||    
T  19470730 attggacaaatttataatagtaaccaattcagatctccattccagtacatacatgctaatatcaaccctataaattaaaactgattggttacatttagtt 19470631  T
Q  648 tggacaaaatttaaactatggcaggttcatacctttgttaatagtttaattgagcaatcaaaaccgattgcttgcaagtaagtttg 733  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19470630 tggacaaaatttaaactatgacaggttcatacctttgttaatagtttaattgagcaatcaaaaccgattgcttgcaagtaagtttg 19470545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 218 - 421
Target Start/End: Original strand, 11151385 - 11151579
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccacatcagtcagcgtg 317  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| |||         
T  11151385 ttatcattatgggtattttgggtatttcacatttttaacatacttttaaaaataaaagattaaaaaattatgacgtgtcagtgccacttcactca----- 11151479  T
Q  318 ccacatcatcacacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatggcga-ggggaatc 416  Q
         ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||    
T  11151480 -----tcatcacacagttaacgtgccacatcagctcatgaatccagtcagattgtctgagggttgaaaatcaaagaatcttctcatggcaagggggaatc 11151574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 39606429 - 39606514
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccac 304  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |  |||||| |||||| ||||||||||||    
T  39606429 ttatcattaggggtattttaggtatttcacatttttaacataattttaaaaataaaa-aaataaaaaatatgacgtgtcagtgccac 39606514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 54673439 - 54673524
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccac 304  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| | | |||||||||||  ||||||||||||    
T  54673439 ttatcattaggggtattttaggtatttcacatttttaacataattttaaaaataaaa-aataaaaaattatgatgtgtcagtgccac 54673524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 479 - 531
Target Start/End: Complemental strand, 19470780 - 19470728
Alignment:
Q  479 cacattaattcatcaaaagtgcttcaacagcaacactgtaccaaattaacatt 531  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  19470780 cacattaatttatcaaaagtgcttcaacagcaacattgtaccaaattaacatt 19470728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 48538122 - 48538031
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccacatcag 309  Q
    ||||||| |||||||| || ||||||||||||||| |||||| ||||||||||||||  |  ||||| | |||| |||||||||||| ||||    
T  48538122 ttatcattaggggtatattaggtatttcacattttcaacataattttaaaaataaaaattaaaaaaaatttgacgtgtcagtgccacttcag 48538031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 37086539 - 37086609
Alignment:
Q  226 aggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccac 304  Q
    ||||||||||| |||||||||| |||| ||||||||||||||||        |||||||||||||| ||||||||||||    
T  37086539 aggggtattttaggtatttcacgttttaaacatacttttaaaaa--------ttaaaaattatgacgtgtcagtgccac 37086609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 52092684 - 52092763
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtca 297  Q
    ||||||| | ||||||||| |||||||||| ||   ||||| ||||||||||||||| ||  |||||||||||| |||||    
T  52092684 ttatcattaagggtattttaggtatttcactttccaaacattcttttaaaaataaaaaataaaaaaattatgacgtgtca 52092763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 478
Target Start/End: Complemental strand, 48537882 - 48537852
Alignment:
Q  448 ccaaatggcaggggtaaaagcctattaaccc 478  Q
    |||||||||||||||||||||||||||||||    
T  48537882 ccaaatggcaggggtaaaagcctattaaccc 48537852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 477
Target Start/End: Complemental strand, 14997056 - 14997027
Alignment:
Q  448 ccaaatggcaggggtaaaagcctattaacc 477  Q
    ||||||||||||||||||||||||||||||    
T  14997056 ccaaatggcaggggtaaaagcctattaacc 14997027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 477
Target Start/End: Complemental strand, 39605613 - 39605584
Alignment:
Q  448 ccaaatggcaggggtaaaagcctattaacc 477  Q
    ||||||||||||||||||||||||||||||    
T  39605613 ccaaatggcaggggtaaaagcctattaacc 39605584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 46652821 - 46652862
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagat 369  Q
    ||||||| ||||| |||||||| |||||||||||||||||||    
T  46652821 acacagtcaacgtaccacatcaactcattaatccagtcagat 46652862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 8e-60; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 226 - 414
Target Start/End: Original strand, 24304110 - 24304288
Alignment:
Q  226 aggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccacatcagtcagcgtgccacatca 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| |||          |||    
T  24304110 aggggtattttgggtatttcacatttttaacatacttttaaaaataaaagattaaaaaattatgacgtgtcagtgccacttcactca----------tca 24304199  T
Q  326 tcacacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatggcgaggggaa 414  Q
    ||||||||| | ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24304200 tcacacagtcagcgtgccacatcaattcattaatccaatcagattgcctgagggttgaaaatcaaagaatcttctaatggcgaggggaa 24304288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 13970788 - 13970874
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccac 304  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||| ||  |||||||||||| |||| |||||||    
T  13970788 ttatcattaggggtattttaggtatttcacatttttaacataattttaacaataaaaaataaaaaaattatgacgtgtcggtgccac 13970874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 51676137 - 51676193
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaa 274  Q
    ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||    
T  51676137 ttatcattaagggtattttaggtatttcacatttttaacatacttttaaaaataaaa 51676193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 51676228 - 51676299
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
    ||||||| | ||||||||||||  |||||||||||||||||| || | ||||||||||||||||||||||||    
T  51676228 acacagtcagcgtgccacatcaattcattaatccagtcagatggcatcagggttgaaaatcaaagaatcttc 51676299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 35712709 - 35712624
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccac 304  Q
    ||||||| | ||||||||| |||||||||  ||||||||||| |||||||||||||| | | |||||||||||| ||||||||||||    
T  35712709 ttatcattaagggtattttaggtatttcatctttttaacataattttaaaaataaaa-aataaaaaattatgacgtgtcagtgccac 35712624  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 24303083 - 24302999
Alignment:
Q  338 cgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatggcga-ggggaatctccaag 422  Q
    ||||||| |||| | |||||||||| |||||| || ||||||| | |||||||||||||||||||| || | ||||||||||||||    
T  24303083 cgtgccaaatcatcacattaatccattcagatggcttgagggt-gtaaatcaaagaatcttctaattgcaagggggaatctccaag 24302999  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 9010960 - 9011035
Alignment:
Q  338 cgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatggcgaggggaa 414  Q
    |||||||||||| | ||||||||||||||||| |  || ||| || ||| ||||||||||||||||||| |||||||    
T  9010960 cgtgccacatcatcacattaatccagtcagatggtttg-ggggtgtaaaccaaagaatcttctaatggcaaggggaa 9011035  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 366
Target Start/End: Original strand, 30232644 - 30232679
Alignment:
Q  331 cagttaacgtgccacatcagctcattaatccagtca 366  Q
    |||||||| |||||||||||||||||||||||||||    
T  30232644 cagttaacatgccacatcagctcattaatccagtca 30232679  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 35712615 - 35712544
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
    ||||||| | |||| |||||||||||||||||||||||||||  | | |||| || ||| ||||||||||||    
T  35712615 acacagtcagcgtgtcacatcagctcattaatccagtcagatgacatcaggggtgtaaaccaaagaatcttc 35712544  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 304
Target Start/End: Original strand, 41669692 - 41669779
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagat-ttaaaaattatgacatgtcagtgccac 304  Q
    ||||||| ||||||||||  |||||||  |||||| |||||| |||||||||||||| ||   |||||| ||||| ||||||||||||    
T  41669692 ttatcattaggggtatttaaggtattttgcattttcaacataattttaaaaataaaaaataaaaaaaatcatgacgtgtcagtgccac 41669779  T

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Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 218 - 422
Target Start/End: Complemental strand, 40462532 - 40462337
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccacatcagtcagcgtg 317  Q
    ||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||         
T  40462532 ttatcattaggggtattttgggggtttcagatttttaacatacttttaaaaataaaagatttaaaaattatgatgtgtcagtgccacttcactca----- 40462438  T
Q  318 ccacatcatcacacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatggcga-ggggaatc 416  Q
         ||||  |||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  40462437 -----tcattgcacagtcagcgtgccacatcagctcattaatccagtcagattgcctcagggttgaaaatcaaagaatcttctaatggcaagggggaatc 40462343  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 9755934 - 9755878
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaa 274  Q
    ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||    
T  9755934 ttatcattaagggtatttttggtatttcacatttttaacatacttttaaaaataaaa 9755878  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 9755846 - 9755775
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
    ||||||| | ||||| |||||| |||||||||||||||||||  | | |||||||||||||||| |||||||    
T  9755846 acacagtcagcgtgctacatcaactcattaatccagtcagatgacattagggttgaaaatcaaataatcttc 9755775  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 26521893 - 26521964
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
    ||||||| | ||||||||||||||||||||||||||||||||  | | |||| || ||| ||||||||||||    
T  26521893 acacagtcagcgtgccacatcagctcattaatccagtcagatgacatcaggggtgtaaaccaaagaatcttc 26521964  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 38974605 - 38974656
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaa 269  Q
    ||||||| ||||||||||| | |||||||||||||||||||| ||| |||||    
T  38974605 ttatcattaggggtattttagatatttcacatttttaacataatttaaaaaa 38974656  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 39005703 - 39005754
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaa 269  Q
    ||||||| ||||||||||| | |||||||||||||||||||| ||| |||||    
T  39005703 ttatcattaggggtattttagatatttcacatttttaacataatttaaaaaa 39005754  T

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Target: scaffold0262 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 218 - 422
Target Start/End: Complemental strand, 3018 - 2825
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgccacatcagtcagcgtg 317  Q
    ||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||         
T  3018 ttatcattaggggtattttgggg-tttcagatttttaacatacttttaaaaataaaagatttaaaaattatgacgtgtcag-gccacttcactca----- 2926  T
Q  318 ccacatcatcacacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttctaatggcga-ggggaatc 416  Q
         ||||| |||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  2925 -----tcatcgcacagtcagcatgccacatcagctcattaatccagtcagattgcctcagggttgaaaatcaaagaatcttctaatggcaagggggaatc 2831  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 27491167 - 27491238
Alignment:
Q  328 acacagttaacgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 399  Q
    ||||||||| ||||||||||||||||||| |||||||||||| || | |||| || ||| ||||||||||||    
T  27491167 acacagttagcgtgccacatcagctcattgatccagtcagatggcatcaggggtgtaaaccaaagaatcttc 27491238  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 12605064 - 12605133
Alignment:
Q  229 ggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagt 299  Q
    |||||||| |||||||||| |||| || |||||||||||||||||| || ||||||||||||| |||||||    
T  12605064 ggtattttaggtatttcac-ttttaaatatacttttaaaaataaaaaatataaaaattatgacgtgtcagt 12605133  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 21511742 - 21511668
Alignment:
Q  226 aggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtg 300  Q
    ||||||||||| ||||||| | ||||| ||||||||||||||||||||| ||  ||| |||||||| ||||||||    
T  21511742 aggggtattttaggtattttatattttaaacatacttttaaaaataaaaaataaaaacattatgacgtgtcagtg 21511668  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 25482406 - 25482329
Alignment:
Q  221 tcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagt 299  Q
    |||| ||||||||||| |||||||| | |||| || |||||||||||||||||| || ||||||||||||| |||||||    
T  25482406 tcattaggggtattttaggtatttctc-ttttaaatatacttttaaaaataaaaaatataaaaattatgacgtgtcagt 25482329  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 7849054 - 7849133
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagt 299  Q
    ||||||| | ||||||||| |||||||||  ||||||||||| | |||||| ||||  | ||||||||||||||||||||||    
T  7849054 ttatcattaagggtatttttggtatttcatctttttaacataatgttaaaattaaa--aattaaaaattatgacatgtcagt 7849133  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 23526559 - 23526644
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgcca 303  Q
    ||||||| | ||||||||| ||||||||||||||||| |||  ||  ||||||| || || ||||||| ||||| |||||||||||    
T  23526559 ttatcattaagggtattttaggtatttcacatttttagcatttttaaaaaaatataaaatataaaaataatgacgtgtcagtgcca 23526644  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 47578402 - 47578486
Alignment:
Q  218 ttatcataaggggtattttgggtatttcacatttttaacatacttttaaaaataaaagatttaaaaattatgacatgtcagtgcca 303  Q
    ||||||| | |||||||||  ||||||||  ||||||||||| ||||||||| |||| | | |||||||||||| ||||| |||||    
T  47578402 ttatcattaagggtattttaagtatttcatctttttaacataattttaaaaacaaaa-aataaaaaattatgacgtgtcattgcca 47578486  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 369
Target Start/End: Original strand, 29043524 - 29043555
Alignment:
Q  338 cgtgccacatcagctcattaatccagtcagat 369  Q
    ||||||||||||||||||||||||||||||||    
T  29043524 cgtgccacatcagctcattaatccagtcagat 29043555  T

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Target: scaffold0408 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 478
Target Start/End: Complemental strand, 10117 - 10087
Alignment:
Q  448 ccaaatggcaggggtaaaagcctattaaccc 478  Q
    |||||||||||||||||||||||||||||||    
T  10117 ccaaatggcaggggtaaaagcctattaaccc 10087  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 11202 - 11240
Alignment:
Q  383 aaaatcaaagaatcttctaatggcgaggggaatctccaa 421  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  11202 aaaaccaaagaatcttctaatggcgagggggatctccaa 11240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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