View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19036_low_3 (Length: 363)
Name: NF19036_low_3
Description: NF19036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19036_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 35072036 - 35071666
Alignment:
| Q |
1 |
tggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatca |
100 |
Q |
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| T |
35072036 |
tggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatca |
35071937 |
T |
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| Q |
101 |
ggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagag |
200 |
Q |
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| T |
35071936 |
ggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagag |
35071837 |
T |
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| Q |
201 |
taattatgaaaag---------------ttgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgtt |
285 |
Q |
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| T |
35071836 |
taataatgaacagttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgtt |
35071737 |
T |
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| Q |
286 |
acaaataagaaacgtgtgtgtatcataagcattaatacgggttagataaagcacctacgtgatgatgtcca |
356 |
Q |
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| T |
35071736 |
acaaataagaaacgtgtgtgtatcataagcattaatacgagttagataaagcacctacgtgttgatgtcca |
35071666 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
89 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
154 |
Q |
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| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
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