View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19036_low_4 (Length: 322)
Name: NF19036_low_4
Description: NF19036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19036_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 35072013 - 35072303
Alignment:
| Q |
14 |
catcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctgg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072013 |
catcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctgg |
35072112 |
T |
|
| Q |
114 |
tacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaagta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072113 |
tacatcagctttgaatacatgggcttctggagtttccttccaatcaatctggttgttgaggaaaattggattttctcgtgaaaattcttggattgaagta |
35072212 |
T |
|
| Q |
214 |
gagaatggggaattctcaaaagggatgttgttgcctggtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgtt |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35072213 |
gagaatggggaattctcaaaagggctgttgttgcctggtatcatagacattttgttgtgagattaaaatattgcagagattgtgttatgtt |
35072303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 35072892 - 35073001
Alignment:
| Q |
53 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
152 |
Q |
| |
|
|||||||||| || || ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
|
|
| T |
35072892 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctcctt |
35072991 |
T |
|
| Q |
153 |
ccaatcaatc |
162 |
Q |
| |
|
|||||||||| |
|
|
| T |
35072992 |
ccaatcaatc |
35073001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 35106968 - 35106859
Alignment:
| Q |
53 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
152 |
Q |
| |
|
|||||||||| || || ||||||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
|
|
| T |
35106968 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctcctt |
35106869 |
T |
|
| Q |
153 |
ccaatcaatc |
162 |
Q |
| |
|
|||||||||| |
|
|
| T |
35106868 |
ccaatcaatc |
35106859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 36296653 - 36296774
Alignment:
| Q |
41 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
140 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||||||||| ||||| |||||||| || || ||||| || || | ||||||||| || || || ||||| |
|
|
| T |
36296653 |
tcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttc |
36296752 |
T |
|
| Q |
141 |
tggagtttccttccaatcaatc |
162 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
36296753 |
tggggtctccttccaatcaatc |
36296774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 24014379 - 24014500
Alignment:
| Q |
41 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
140 |
Q |
| |
|
|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
|
|
| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
|
| Q |
141 |
tggagtttccttccaatcaatc |
162 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
24014479 |
tggggtctccttccaatcaatc |
24014500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 24040948 - 24041053
Alignment:
| Q |
53 |
ttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
152 |
Q |
| |
|
|||||||||| || || ||||||||| ||||| |||||||| || || ||||| || || | |||||| ||||| ||||| |||||||| || ||||| |
|
|
| T |
24040948 |
ttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctcctt |
24041047 |
T |
|
| Q |
153 |
ccaatc |
158 |
Q |
| |
|
|||||| |
|
|
| T |
24041048 |
ccaatc |
24041053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
71 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
152 |
Q |
| |
|
||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University