View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19037_high_2 (Length: 236)
Name: NF19037_high_2
Description: NF19037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19037_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10077194 - 10076956
Alignment:
| Q |
1 |
caccaagtctgaaaaccatcaaacac--caaccacatttctggaggtaacactaaatcccaaccacctgaaaatactatactgcacgtgaaaagcaaaat |
98 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10077194 |
caccaagtctgaaaaccatcaaacacaccaaccacatttctggaggtaacactaaatcccaaccacctgaaaatactatactgcacctgaaaagcaaaat |
10077095 |
T |
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| Q |
99 |
cacatgtgataaacaagtgacaacttgaattcacccttaatctttggtatt-ttttatgagaatatttgattctttaaaatttcagactatatattcaga |
197 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10077094 |
gacatgtgataaacaagtgacaacttgaaatcacccttaatctttggtatttttttatgagaatatttgattctttaaaatttcagactatatattaaga |
10076995 |
T |
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| Q |
198 |
aataataaatttaaataagtttagaccgttttaccctta |
236 |
Q |
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||||||||| |||||||||| |||||| ||||||||||| |
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| T |
10076994 |
aataataaacttaaataagtgtagaccattttaccctta |
10076956 |
T |
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