View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19037_low_1 (Length: 464)

Name: NF19037_low_1
Description: NF19037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19037_low_1
NF19037_low_1
[»] chr2 (3 HSPs)
chr2 (2-215)||(26661431-26661644)
chr2 (79-209)||(6049912-6050043)
chr2 (372-437)||(26661800-26661865)
[»] chr6 (3 HSPs)
chr6 (2-215)||(21481349-21481562)
chr6 (81-215)||(19701161-19701296)
chr6 (317-441)||(21481663-21481788)
[»] chr7 (3 HSPs)
chr7 (5-203)||(13331531-13331727)
chr7 (5-203)||(13342446-13342642)
chr7 (79-209)||(33430223-33430355)
[»] chr5 (1 HSPs)
chr5 (5-203)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (50-215)||(32717810-32717975)
chr8 (50-215)||(10637619-10637784)
[»] chr3 (1 HSPs)
chr3 (22-203)||(15761973-15762154)
[»] chr1 (2 HSPs)
chr1 (50-215)||(22893774-22893939)
chr1 (79-209)||(44306129-44306259)
[»] scaffold0586 (1 HSPs)
scaffold0586 (81-215)||(9594-9729)
[»] chr4 (1 HSPs)
chr4 (96-209)||(13893697-13893810)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 26661431 - 26661644
Alignment:
Q  2 ctacccttgccattctcgctattctttttctctgattcccactaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgc 101  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661431 ctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgc 26661530  T
Q  102 atcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661531 atcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgat 26661630  T
Q  202 tgatatcaattctc 215  Q
    ||||||||||||||    
T  26661631 tgatatcaattctc 26661644  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 6049912 - 6050043
Alignment:
Q  79 aaacccatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttcc 177  Q
    |||||||| ||||||||| ||| |||||||||||||| | || |||| | |||||||||||||| |||||||||||||| |||||| |   |||||||||    
T  6049912 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcc 6050011  T
Q  178 attactcaacatagatttggtgattgatatca 209  Q
    ||||||||||||||||||||||||||||||||    
T  6050012 attactcaacatagatttggtgattgatatca 6050043  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 26661800 - 26661865
Alignment:
Q  372 ttagagacaacttgtttttattaacccaccttcttctaacttttcccaaaatatgctaataaccat 437  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  26661800 ttagagacaacttgtttttattaaaccaccttcttctaactttttccaaaatatgctaataaccat 26661865  T

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Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 21481349 - 21481562
Alignment:
Q  2 ctacccttgccattctcgctattctttttctctgattcccactaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgc 101  Q
    |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481349 ctacccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgc 21481448  T
Q  102 atcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 201  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481449 atcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaacatagatttggtgat 21481548  T
Q  202 tgatatcaattctc 215  Q
    ||||||||||||||    
T  21481549 tgatatcaattctc 21481562  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 19701161 - 19701296
Alignment:
Q  81 acccatgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccat 179  Q
    ||||||||||||||| |||| |||||||||||||| | ||| ||||| ||||||||| |||| |||||||||||||||||||||||  ||||||||||||    
T  19701161 acccatgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccat 19701260  T
Q  180 tactcaacatagatttggtgattgatatcaattctc 215  Q
    ||||||||||||||||| ||||| |||||| |||||    
T  19701261 tactcaacatagatttgttgatttatatcatttctc 19701296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 317 - 441
Target Start/End: Original strand, 21481663 - 21481788
Alignment:
Q  317 ccactgtttggcaattcttgnnnnnnncccaatcatgaatcaatgcnnnnnnn-gtttagagacaacttgtttttattaacccaccttcttctaactttt 415  Q
    ||||||||||||||||||||       |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  416 cccaaaatatgctaataaccatgacg 441  Q
    ||||||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacg 21481788  T

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Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 13331727 - 13331531
Alignment:
Q  5 cccttgccattctcgctattctttttctctgattcccactaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 104  Q
    |||||||||||| |||||||||||  ||||||||||| ||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13331727 cccttgccattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13331630  T
Q  105 aactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 203  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331629 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

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Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 13342642 - 13342446
Alignment:
Q  5 cccttgccattctcgctattctttttctctgattcccactaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 104  Q
    |||||| ||||| |||||||||||  ||||||||||| ||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  13342642 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13342545  T
Q  105 aactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 203  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342544 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 33430355 - 33430223
Alignment:
Q  79 aaacccatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaa-tttcatcataattcttc 176  Q
    ||||||| |||||||| | ||| |||||| || |||| | |||| ||||  |||||||| |||| ||||||||||||||||| |||  |  ||||  |||    
T  33430355 aaacccacgatctttgaggtgttcatcaagtgtttgctatttggattttgaatttcactattctcttcaaggtaccatctaattttttttttaatcgttc 33430256  T
Q  177 cattactcaacatagatttggtgattgatatca 209  Q
    ||||||||||| |||||||| ||||||| ||||    
T  33430255 cattactcaacgtagatttgatgattgacatca 33430223  T

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Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 5672198 - 5672002
Alignment:
Q  5 cccttgccattctcgctattctttttctctgattcccactaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatc 104  Q
    |||||| ||||| |||||||||||  ||||||||||| ||||||||||||||||||| | |||| |||||||   |||||||||||||||||||| ||||    
T  5672198 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 5672101  T
Q  105 aactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 203  Q
    ||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672100 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

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Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 50 - 215
Target Start/End: Complemental strand, 32717975 - 32717810
Alignment:
Q  50 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaag 148  Q
    |||||||||||||| |||| || |||||||||||||| |||||||| |||| ||||||||||||||   ||| ||||| |||||||||||||| ||||||    
T  32717975 ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 32717877  T
Q  149 gtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctc 215  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  32717876 gtaccatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctc 32717810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 10637619 - 10637784
Alignment:
Q  50 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaag 148  Q
    |||||||||||||| |||| || |||||||||||||| |||||||| |||| ||||||||||||||   ||| ||||| |||||||||||||| ||||||    
T  10637619 ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 10637717  T
Q  149 gtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctc 215  Q
    ||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  10637718 gtatcatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctc 10637784  T

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Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 15762154 - 15761973
Alignment:
Q  22 attctttttctctgattcccactaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatcaactgcttgccaattgg 121  Q
    ||||||||||||||||||||||||||||||||||| |||| | |||| ||||||||  | |  ||||||||||| ||| ||||||||  |||| |||| |    
T  15762154 attctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgatctttgtatgttcatcaactatttgctaatttg 15762055  T
Q  122 gtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 203  Q
    | ||||||||||||| |||| ||||| ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762054 ggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

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Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 22893774 - 22893939
Alignment:
Q  50 ttttcacccatgatattctgtataaaaagaaacccatgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaag 148  Q
    |||||||||||||| |||| || |||| |||||||||||||||||| |||| ||||||||||||||   ||| ||||| |||||||||||||| ||||||    
T  22893774 ttttcacccatgatcttctata-aaaaggaaacccatgatctttgtagtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaag 22893872  T
Q  149 gtaccatctaatttcatcataattcttccattactcaacatagatttggtgattgatatcaattctc 215  Q
    ||| |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  22893873 gtaacatctaatttcattttaattcttccattactcaacatagatttggtgatttatatcatttctc 22893939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 44306129 - 44306259
Alignment:
Q  79 aaacccatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttcc 177  Q
    |||||||| ||||||||| ||| |||||||||||||| | || |||| | |||||||||||||| |||||||||||||| || ||| |   |||||||||    
T  44306129 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatc-aaattcttttcaattcttcc 44306227  T
Q  178 attactcaacatagatttggtgattgatatca 209  Q
    ||||||||||||||||||||| ||||||||||    
T  44306228 attactcaacatagatttggtcattgatatca 44306259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 9594 - 9729
Alignment:
Q  81 acccatgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccat 179  Q
    ||||||||||||||| |||| |||||||||||||    ||| ||||| |||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  9594 acccatgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccat 9693  T
Q  180 tactcaacatagatttggtgattgatatcaattctc 215  Q
    ||||||||||||||||||||||| |||||| |||||    
T  9694 tactcaacatagatttggtgatttatatcatttctc 9729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 13893810 - 13893697
Alignment:
Q  96 gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtaccatctaatttcatcataattcttccattactcaacatagattt 195  Q
    |||| |||||||||||||  | || |||| | |||||||||||||| |||||||||||||| |||||| |   |||||||||||||||||||||||||||    
T  13893810 gtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagattt 13893711  T
Q  196 ggtgattgatatca 209  Q
    ||||||||||||||    
T  13893710 ggtgattgatatca 13893697  T

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