View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19038_low_1 (Length: 717)
Name: NF19038_low_1
Description: NF19038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19038_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 32 - 702
Target Start/End: Original strand, 42578654 - 42579324
Alignment:
| Q |
32 |
aacaacagcatctcaaatagtaaaaagccaaacacccaaacagtctgttattattccgggatggagtatgataaaataaaatagaatacaatcctgattt |
131 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||| || |
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| T |
42578654 |
aacaaaagcatctcaaatagtaaaaagccaaacacccaaacagtctgttattattccgagttggagtatgataatataaaatagaataaaatcctgaatt |
42578753 |
T |
|
| Q |
132 |
agcaaataacaatactagataatgtcaacgaccaatagccctatttatgacattgtaaacccaaatgacttgcacagaaactaaacctgcttagaggtta |
231 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
42578754 |
agcaaataacaatactagataatgtcaacgaccaataaccctatttatgacattgtaaacccaaatgacttacacagaaactaaacctgcttagatgtta |
42578853 |
T |
|
| Q |
232 |
gagcatagaaatgatagtagttaacgaacatgaaccaaaagctatgagcttgctctttcaaaggagtcaaccttgtatttttgttttaatctaccagacg |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42578854 |
gagcatagaaatgatagtagttaacgaacatgaaccaaaagctatgagcttgctctttcaaaggagtcaaccttgtatttttgttttaatctaccagacg |
42578953 |
T |
|
| Q |
332 |
taaacatgaaggtaaaagctttaaaattttccacaaagaagtatataaagaacaactctttcatcatttgcagctatatttcataatggttataattgtt |
431 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42578954 |
taaacatgaaggtaaaagctttaaaattttccacgaagaagtatataaagaacaactctttcatcatttgcagctatatttcataatggttataattgtt |
42579053 |
T |
|
| Q |
432 |
acaaatttgttgcaggagtccattaatgtggctgcaaaaaggtggggtctagagtgccttggatgtcggataaatgactctggcacgagattgatgccac |
531 |
Q |
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| T |
42579054 |
acaaatttgttgcaggagtccattaatgtggctgcaaaaaggtggggtctagagtgccttggatgtcggataaatgactctggcacgagattgatgccac |
42579153 |
T |
|
| Q |
532 |
agaattgtgcagacaacgagtaatatgttgtccttccttacctactgtattcaagagaacaaatgcaaaatgagatttctttatgctcgttgtagaaata |
631 |
Q |
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||||| |||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42579154 |
agaatggtgcagacgacgagtaatattttgtctttccttacctactgtatttaagagaacaagtgcaaaatgagatttctttatgctcgttgtagaaata |
42579253 |
T |
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| Q |
632 |
tttgctttattcatgtgtttattacagctgaatagtacagtttaaatagacgtttacatagggatacaagt |
702 |
Q |
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| T |
42579254 |
tttgctttattcatgtgtttattacagctgaatagtacagtttaaatagacgtttacatagggatacaagt |
42579324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 235 - 681
Target Start/End: Original strand, 42571729 - 42572174
Alignment:
| Q |
235 |
catagaaatgatagtagttaacgaacatgaaccaaaagctatgagcttgctctttcaaaggagtcaaccttgtatttttgttttaatctaccagacgtaa |
334 |
Q |
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||||| ||| ||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
42571729 |
catagcaataatagtagataacaaacatgatccaaaagctatgagcttgctcttccaaaggagtcaaccttgtatttttgttttaatctaccaaatgtaa |
42571828 |
T |
|
| Q |
335 |
acatgaaggtaaaagctttaaaattttccacaaagaagtatataaagaacaactctttcatcatttgcagctatatttcataatggtta---taattgtt |
431 |
Q |
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| T |
42571829 |
atatgaagttgagagttttaaaattttcc---atgaagtatataaagaacaactctgtcatcatctgcagtcatatttcataatggttaatttaattgtt |
42571925 |
T |
|
| Q |
432 |
acaaatttgttgcaggagtccattaatgtggctgcaaaaaggtggggtctagagtgccttggatgtcggataaatgactctggcacgagattgatgccac |
531 |
Q |
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||| | |||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||| ||||||||||| | ||||||||| || |
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| T |
42571926 |
acataattgttgcaggagtccattaatgcggctgcaaaaagatggggtctagagtgccttaaatgctggatacatgactctggcgcaagattgatgtca- |
42572024 |
T |
|
| Q |
532 |
agaattgtgcagacaacgagtaatatgttgtccttccttacctactgtattcaagagaacaaatgcaaaatgagatttctttatgctcgttgtagaaata |
631 |
Q |
| |
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||||| | | | | ||||||||| ||||| || | ||||| ||||||| ||| |||||| ||||| ||||||||| |||||||| | |||| ||||| |
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| T |
42572025 |
agaatagaaaaaatgatgagtaatatcttgtcttttcctacctcctgtattaaagcgaacaagtgcaacatgagatttgtttatgcttgctgtataaata |
42572124 |
T |
|
| Q |
632 |
tttgctttattcatgtgtttattacagctgaatagtacagtttaaataga |
681 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
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| T |
42572125 |
tttgctttattcatatgtctattacagctgaatattacagtttaaataga |
42572174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 369 - 488
Target Start/End: Original strand, 42575223 - 42575344
Alignment:
| Q |
369 |
gaagtatataaagaacaactctttcatcatttgcagctatatttcataatggttat--aattgttacaaatttgttgcaggagtccattaatgtggctgc |
466 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
42575223 |
gaaggatataaagaacaactctttcatcatctgcagccatatttcatactggttatttaattgtgacaaaattgttgcaggagtccattaatgtggctgg |
42575322 |
T |
|
| Q |
467 |
aaaaaggtggggtctagagtgc |
488 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
42575323 |
aaaaagttggggtctagagtgc |
42575344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 491
Target Start/End: Original strand, 42609935 - 42610056
Alignment:
| Q |
373 |
tatataaagaacaactctttcatcatttgcagctatatttcataatggtta---taattgttacaaatttgttgcaggagtccattaatgtggctgcaaa |
469 |
Q |
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||||||||||| ||||||| | | || ||| || | |||| |||||||||| ||||||| | ||| ||||||||||||||||||||||||||||| | |
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| T |
42609935 |
tatataaagaataactcttccgttatctgccgccaaatttaataatggttaatttaattgtgaaaaaattgttgcaggagtccattaatgtggctgccca |
42610034 |
T |
|
| Q |
470 |
aaggtggggtctagagtgcctt |
491 |
Q |
| |
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||| |||||||| ||||||||| |
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| T |
42610035 |
aagttggggtcttgagtgcctt |
42610056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 42575040 - 42575177
Alignment:
| Q |
183 |
attgtaaacccaaatgacttgcacagaaactaaacctgcttagaggttagagcatagaaatgatagtagttaacgaacatgaaccaaaagctatgagctt |
282 |
Q |
| |
|
||||||| || |||| |||| |||||| || |||||||||||| |||||| |||| ||| | | | | |||| ||||||||||||||| || |||||| |
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| T |
42575040 |
attgtaatcctaaataacttaaacagaagctcaacctgcttagatgttagaatatagcaataacaattgataacaaacatgaaccaaaagatacgagctt |
42575139 |
T |
|
| Q |
283 |
gctctttcaaaggagtcaaccttgtatttttgttttaa |
320 |
Q |
| |
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|||||| || | | |||||||||||||||| ||||||| |
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| T |
42575140 |
gctcttccatatgtgtcaaccttgtattttggttttaa |
42575177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 503
Target Start/End: Original strand, 42597332 - 42597403
Alignment:
| Q |
432 |
acaaatttgttgcaggagtccattaatgtggctgcaaaaaggtggggtctagagtgccttggatgtcggata |
503 |
Q |
| |
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||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||| ||||| |
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| T |
42597332 |
acaaaattgttgcaggattccattaatgtgcgtgcaaaaaggtggggaatagagtgtgttggatgttggata |
42597403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 601 - 681
Target Start/End: Original strand, 43712790 - 43712870
Alignment:
| Q |
601 |
atgagatttctttatgctcgttgtagaaatatttgctttattcatgtgtttattacagctgaatagtacagtttaaataga |
681 |
Q |
| |
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||||||||| ||||||||| |||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |
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| T |
43712790 |
atgagatttgtttatgctctctgtataaatatttgctttattcatatgcctattacagctgaatattacagtttaaataga |
43712870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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