View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19039_high_1 (Length: 220)

Name: NF19039_high_1
Description: NF19039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19039_high_1
NF19039_high_1
[»] chr7 (5 HSPs)
chr7 (17-201)||(17506963-17507147)
chr7 (17-201)||(17546067-17546251)
chr7 (32-193)||(15645130-15645291)
chr7 (129-201)||(45976471-45976543)
chr7 (138-202)||(551610-551674)
[»] chr8 (3 HSPs)
chr8 (17-204)||(25890964-25891151)
chr8 (17-62)||(18309115-18309160)
chr8 (138-192)||(37718866-37718920)
[»] chr6 (1 HSPs)
chr6 (32-202)||(7956709-7956879)
[»] chr1 (1 HSPs)
chr1 (17-106)||(39584916-39585005)
[»] chr3 (1 HSPs)
chr3 (51-202)||(14853834-14853985)
[»] chr5 (2 HSPs)
chr5 (45-95)||(32239704-32239754)
chr5 (50-95)||(17674020-17674065)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 17507147 - 17506963
Alignment:
Q  17 agaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaaga 116  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  17507147 agaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcacattaagt 17507048  T
Q  117 ataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 201  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17507047 ataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

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Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 17546067 - 17546251
Alignment:
Q  17 agaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaaga 116  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  17546067 agaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcacattaagt 17546166  T
Q  117 ataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 201  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  17546167 ataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 15645130 - 15645291
Alignment:
Q  32 aaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgcc 131  Q
    |||||||||||| |||| ||||||||||  ||||||||||||||||||||||||||||| ||||  |||| ||  ||||||||  |||||||||||||||    
T  15645130 aaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgatgcc 15645229  T
Q  132 atattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttag 193  Q
    |  |||||||||||||| |||  |||||||||||| ||||| ||||||| ||||||||||||    
T  15645230 aagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttag 15645291  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 45976543 - 45976471
Alignment:
Q  129 gccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacct 201  Q
    |||| ||||||||||||||| ||||||||||  ||||| ||||| ||||| || |||||||||| || |||||    
T  45976543 gccaaattagatttagtaggaaggcgatcacaaagcagccgccaagcaaaaatagacacctttaaaaaaacct 45976471  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 551674 - 551610
Alignment:
Q  138 gatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctg 202  Q
    ||||| ||||| | ||||||||||| ||| ||||| ||||| ||||||||||||| | |||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctg 551610  T

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Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 25890964 - 25891151
Alignment:
Q  17 agaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaaga 116  Q
    |||||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |||||     
T  25890964 agaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccactttaagt 25891063  T
Q  117 ataccacgtgatgccatattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctgat 204  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  25891064 ataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgat 25891151  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 18309160 - 18309115
Alignment:
Q  17 agaccacatctccctaaagcaaggacacgagagaaacaaatgacta 62  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||    
T  18309160 agaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 37718866 - 37718920
Alignment:
Q  138 gatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacaccttta 192  Q
    ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||||||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacaccttta 37718920  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 7956879 - 7956709
Alignment:
Q  32 aaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgcc 131  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||  |||| ||  ||||||||  |||||||| ||||||    
T  7956879 aaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagatgcc 7956780  T
Q  132 atattagatttagtaggtaggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctg 202  Q
    |  |||||||||||||| ||||||||||||||||  ||||| ||||||| ||||||||||||  |||||||    
T  7956779 aagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctg 7956709  T

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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 39584916 - 39585005
Alignment:
Q  17 agaccacatctccctaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggt 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  39584916 agaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

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Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 14853834 - 14853985
Alignment:
Q  51 aacaaatgactagcatcctccacctggccacaccccgaaatacacgaagaatcggtcacattaagaataccacgtgatgccatattagatttagtaggta 150  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||  |||| |   ||||||||  ||||||||||||||||  ||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  151 ggcgatcacggagcagtcgccacgcaaagattgacacctttagaagaacctg 202  Q
    | |||||||||||||| ||||| ||||||| |||||||||||| ||||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctg 14853985  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 32239704 - 32239754
Alignment:
Q  45 gagagaaacaaatgactagcatcctccacctggccacaccccgaaatacac 95  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  32239704 gagagaaacaaatgacgagcatcctccacctgaccacaccccgaaacacac 32239754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 17674020 - 17674065
Alignment:
Q  50 aaacaaatgactagcatcctccacctggccacaccccgaaatacac 95  Q
    ||||||||||| ||||||||||||||||||||| || |||| ||||    
T  17674020 aaacaaatgacgagcatcctccacctggccacaaccagaaacacac 17674065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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