View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19039_high_1_N (Length: 352)
Name: NF19039_high_1_N
Description: NF19039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19039_high_1_N |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 3118598 - 3118247
Alignment:
| Q |
1 |
tataaatgaaagagaaagtattatattatatatgttgcaacaagcatccttgttatattcattcctttgcttttataacaggtgcaaacaatttaattcc |
100 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3118598 |
tataaatgaaagagaaagtattatactatataggttgcaacaagcatccttgttatattcattcctttgcttttataacaggtgcaaacaatttaattcc |
3118499 |
T |
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| Q |
101 |
aatggaaattgctctaaagatagcaaacaaaatcaaacacagagagagattctgtgtgtatattgtgattcctatgtggcctgaaggtgtaccctcaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3118498 |
aatggaaattgctctaaagatagcaaacaaaatcaaacacaaagagagattctgtgtgtatattgtgattcctatgtggcctgaaggtgtaccctcaagt |
3118399 |
T |
|
| Q |
201 |
acagctactcagaggattctcttttggcaggtgagcttcctttaccacttgaaaaaatggtaacaaatcataagaatttctagtccaaagacatgattat |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3118398 |
acagctactcagcggattctcttttggcaggtgagcttcctttaccacttgaaaaattggtaacaaatcataataatttctagtccaaagacatgattat |
3118299 |
T |
|
| Q |
301 |
tatgaagaacattcatatccatcattaaaaaccttaacattgttatggtatc |
352 |
Q |
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| T |
3118298 |
tatgaagaacattcatatccatcattaaaaaccttaacattgttatggtatc |
3118247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 3112094 - 3111860
Alignment:
| Q |
21 |
ttatattatatatgttgcaacaagcatccttgttatattcattcctttgcttttata-acaggtgcaaacaatttaattccaatggaaattgctctaaag |
119 |
Q |
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||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| || |||||||| ||||| |
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| T |
3112094 |
ttataatatataggttgcaacaggcatccttgttatattcattccttttcttttattcacaggtgcaaacaacttaattccgattgaaattgcactaaaa |
3111995 |
T |
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| Q |
120 |
atagcaaacaaaatcaaacacagagagagattctgtgtgtatattgtgattcctatgtggcctgaaggtgtaccctcaagtacagctactcagaggattc |
219 |
Q |
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||||| |||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3111994 |
atagccaacaaaatcaaacagaaagaaagattctctgtgtatattgtgattcctatgtggcctgaaggtgtaccctcaagtacagctactcagcggattc |
3111895 |
T |
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| Q |
220 |
tcttttggcaggtgagcttcctttaccacttgaaa |
254 |
Q |
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| T |
3111894 |
tcttttggcaggtaagcttcccttaccacttgaaa |
3111860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 121
Target Start/End: Original strand, 28534493 - 28534524
Alignment:
| Q |
90 |
aatttaattccaatggaaattgctctaaagat |
121 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28534493 |
aatttaattccaatggaaattgctctaaagat |
28534524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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