View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19039_high_2 (Length: 346)

Name: NF19039_high_2
Description: NF19039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19039_high_2
NF19039_high_2
[»] chr5 (24 HSPs)
chr5 (12-346)||(12825377-12825711)
chr5 (12-346)||(30731942-30732276)
chr5 (12-346)||(42513898-42514232)
chr5 (12-344)||(27116801-27117121)
chr5 (12-340)||(28535303-28535631)
chr5 (12-340)||(31641695-31642023)
chr5 (12-346)||(23238562-23238895)
chr5 (12-346)||(35983419-35983753)
chr5 (12-346)||(42928309-42928643)
chr5 (12-313)||(27795694-27795996)
chr5 (12-163)||(10777145-10777296)
chr5 (14-163)||(8299812-8299961)
chr5 (12-163)||(25857052-25857203)
chr5 (55-310)||(33169872-33170127)
chr5 (230-310)||(24408142-24408222)
chr5 (240-310)||(18089617-18089687)
chr5 (216-286)||(20208551-20208621)
chr5 (12-115)||(18089392-18089494)
chr5 (230-277)||(23878398-23878445)
chr5 (243-310)||(27165789-27165856)
chr5 (243-281)||(476456-476494)
chr5 (243-280)||(380145-380182)
chr5 (243-284)||(11574553-11574594)
chr5 (243-284)||(22095109-22095150)
[»] chr1 (18 HSPs)
chr1 (12-346)||(11908733-11909067)
chr1 (12-346)||(6050781-6051115)
chr1 (12-346)||(35541227-35541561)
chr1 (12-313)||(47622705-47623006)
chr1 (87-307)||(2491429-2491649)
chr1 (12-132)||(43388757-43388877)
chr1 (230-281)||(22191627-22191678)
chr1 (306-346)||(51052658-51052698)
chr1 (231-281)||(3073993-3074043)
chr1 (230-281)||(21405081-21405132)
chr1 (216-286)||(47106513-47106583)
chr1 (216-285)||(30110757-30110826)
chr1 (216-283)||(17708220-17708287)
chr1 (206-309)||(33260515-33260618)
chr1 (206-309)||(33280674-33280777)
chr1 (201-263)||(43944291-43944353)
chr1 (220-281)||(28358133-28358194)
chr1 (216-281)||(52691715-52691780)
[»] scaffold0034 (1 HSPs)
scaffold0034 (12-346)||(105471-105805)
[»] chr8 (24 HSPs)
chr8 (12-346)||(8299981-8300315)
chr8 (12-346)||(7924564-7924898)
chr8 (12-344)||(41664996-41665329)
chr8 (12-340)||(9922785-9923113)
chr8 (63-346)||(13396566-13396849)
chr8 (12-346)||(32266740-32267074)
chr8 (169-344)||(172283-172458)
chr8 (12-313)||(13879115-13879416)
chr8 (12-313)||(25090598-25090899)
chr8 (12-163)||(17699841-17699992)
chr8 (12-163)||(20824660-20824811)
chr8 (12-142)||(43270834-43270964)
chr8 (57-163)||(2170697-2170803)
chr8 (12-61)||(172667-172716)
chr8 (12-115)||(42177180-42177280)
chr8 (242-286)||(12134566-12134610)
chr8 (230-281)||(28993075-28993126)
chr8 (216-282)||(17659073-17659139)
chr8 (216-286)||(23680400-23680470)
chr8 (252-293)||(13200296-13200337)
chr8 (227-280)||(15439412-15439465)
chr8 (227-280)||(15530716-15530769)
chr8 (216-281)||(25193332-25193397)
chr8 (266-315)||(42177471-42177520)
[»] chr7 (23 HSPs)
chr7 (12-346)||(4937756-4938090)
chr7 (12-346)||(11276876-11277214)
chr7 (12-346)||(47877161-47877495)
chr7 (12-340)||(17720819-17721147)
chr7 (12-346)||(29968152-29968486)
chr7 (12-346)||(235066-235399)
chr7 (137-343)||(37919725-37919931)
chr7 (12-208)||(31422918-31423114)
chr7 (12-312)||(37254970-37255270)
chr7 (230-281)||(17055772-17055823)
chr7 (216-283)||(34231940-34232007)
chr7 (231-281)||(22819564-22819614)
chr7 (230-286)||(27218966-27219022)
chr7 (230-289)||(4344054-4344113)
chr7 (252-315)||(25619674-25619737)
chr7 (243-310)||(36363738-36363805)
chr7 (216-286)||(4077513-4077583)
chr7 (241-275)||(27854299-27854333)
chr7 (243-281)||(28173835-28173873)
chr7 (252-314)||(31422814-31422876)
chr7 (252-286)||(45943089-45943123)
chr7 (241-281)||(11338990-11339030)
chr7 (243-279)||(27941353-27941389)
[»] chr4 (27 HSPs)
chr4 (12-346)||(23642219-23642553)
chr4 (12-346)||(47418982-47419316)
chr4 (12-346)||(19755445-19755779)
chr4 (12-346)||(19784027-19784361)
chr4 (14-346)||(15740399-15740730)
chr4 (12-346)||(1828168-1828502)
chr4 (174-346)||(47685685-47685857)
chr4 (12-313)||(54482787-54483088)
chr4 (12-312)||(48312307-48312606)
chr4 (12-340)||(2821662-2821993)
chr4 (12-157)||(5789720-5789865)
chr4 (11-208)||(55725333-55725530)
chr4 (12-74)||(23647877-23647939)
chr4 (14-160)||(46146040-46146187)
chr4 (12-124)||(19735363-19735475)
chr4 (12-310)||(11586826-11587124)
chr4 (241-286)||(20395834-20395879)
chr4 (241-281)||(4640536-4640576)
chr4 (243-286)||(29553599-29553642)
chr4 (216-283)||(42778479-42778546)
chr4 (243-310)||(46145889-46145956)
chr4 (243-286)||(49926125-49926168)
chr4 (216-283)||(53486785-53486852)
chr4 (69-127)||(7098879-7098937)
chr4 (243-281)||(23657638-23657676)
chr4 (231-281)||(46543222-46543272)
chr4 (230-279)||(35324211-35324260)
[»] chr3 (30 HSPs)
chr3 (12-346)||(2364455-2364789)
chr3 (12-346)||(19919857-19920191)
chr3 (12-346)||(10323199-10323533)
chr3 (12-346)||(34332443-34332777)
chr3 (188-346)||(7312954-7313112)
chr3 (90-346)||(40930245-40930490)
chr3 (12-313)||(48569667-48569968)
chr3 (229-338)||(7032492-7032601)
chr3 (12-132)||(17097505-17097625)
chr3 (55-310)||(962834-963089)
chr3 (12-310)||(3141066-3141363)
chr3 (12-144)||(12341883-12342015)
chr3 (12-132)||(15312973-15313094)
chr3 (12-131)||(16179340-16179459)
chr3 (230-279)||(31547616-31547665)
chr3 (230-281)||(44888147-44888198)
chr3 (244-286)||(26010285-26010327)
chr3 (216-286)||(26846105-26846175)
chr3 (216-286)||(47537506-47537576)
chr3 (241-281)||(9509997-9510037)
chr3 (241-281)||(9517972-9518012)
chr3 (252-312)||(19890890-19890950)
chr3 (216-286)||(15279803-15279873)
chr3 (53-163)||(29523390-29523500)
chr3 (243-281)||(31675173-31675211)
chr3 (243-281)||(31921209-31921247)
chr3 (12-145)||(19891056-19891189)
chr3 (230-282)||(2756084-2756136)
chr3 (54-122)||(20531720-20531788)
chr3 (243-279)||(27924925-27924961)
[»] scaffold0472 (1 HSPs)
scaffold0472 (12-343)||(3433-3764)
[»] chr6 (32 HSPs)
chr6 (118-346)||(2553815-2554043)
chr6 (148-346)||(21168377-21168574)
chr6 (15-301)||(24767060-24767346)
chr6 (36-314)||(15958465-15958743)
chr6 (12-81)||(2554049-2554118)
chr6 (12-313)||(14372619-14372920)
chr6 (12-163)||(10576878-10577029)
chr6 (12-163)||(17573284-17573435)
chr6 (12-163)||(17605962-17606113)
chr6 (12-163)||(21629735-21629886)
chr6 (12-142)||(13938101-13938231)
chr6 (12-115)||(20882661-20882764)
chr6 (230-310)||(13937914-13937994)
chr6 (241-281)||(26513967-26514007)
chr6 (61-281)||(33185678-33185898)
chr6 (246-340)||(20882895-20882989)
chr6 (216-286)||(649898-649968)
chr6 (231-281)||(29055763-29055813)
chr6 (241-286)||(18051306-18051351)
chr6 (216-283)||(9199084-9199151)
chr6 (267-314)||(11462617-11462664)
chr6 (251-305)||(18682401-18682455)
chr6 (252-286)||(25318092-25318126)
chr6 (252-286)||(26205586-26205620)
chr6 (241-286)||(333532-333577)
chr6 (243-284)||(5085885-5085926)
chr6 (241-286)||(17079048-17079093)
chr6 (216-281)||(25350466-25350531)
chr6 (216-282)||(11060694-11060757)
chr6 (230-286)||(19350182-19350238)
chr6 (240-284)||(23065903-23065947)
chr6 (230-286)||(29976861-29976917)
[»] chr2 (17 HSPs)
chr2 (37-313)||(40176879-40177155)
chr2 (170-340)||(41207200-41207370)
chr2 (12-313)||(28252931-28253232)
chr2 (12-311)||(12645749-12646048)
chr2 (12-145)||(14440125-14440256)
chr2 (216-281)||(18844465-18844530)
chr2 (18-79)||(33515841-33515902)
chr2 (241-286)||(36804150-36804195)
chr2 (230-278)||(12807996-12808044)
chr2 (252-311)||(38604247-38604306)
chr2 (231-281)||(16315622-16315672)
chr2 (252-286)||(22052865-22052899)
chr2 (242-292)||(44547706-44547756)
chr2 (216-281)||(32991314-32991379)
chr2 (241-286)||(36804365-36804410)
chr2 (241-281)||(18489051-18489091)
chr2 (241-309)||(31093468-31093536)
[»] scaffold0179 (2 HSPs)
scaffold0179 (216-286)||(7766-7836)
scaffold0179 (216-286)||(12700-12770)
[»] scaffold0007 (1 HSPs)
scaffold0007 (241-286)||(182367-182412)
[»] scaffold1350 (1 HSPs)
scaffold1350 (12-67)||(1-56)
[»] scaffold0555 (1 HSPs)
scaffold0555 (243-281)||(7911-7949)
[»] scaffold0043 (1 HSPs)
scaffold0043 (243-281)||(34468-34506)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 12825711 - 12825377
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  12825711 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttgga 12825612  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825611 gtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 12825512  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12825511 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggatgaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 12825412  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||||||||||||||||||    
T  12825411 tcagtgatagacagatggctctggttacctaatca 12825377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 30731942 - 30732276
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30731942 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttggt 30732041  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  |||||||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732042 gtggagatgttcctctgtgtgtccggtttagacgcctttttgacttgactgctcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 30732141  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732142 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 30732241  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||||||||||||||||||    
T  30732242 tcagtgatagacagatggctctggttacctaatca 30732276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 42514232 - 42513898
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||    
T  42514232 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttctggcgtgattgttggt 42514133  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42514132 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttccttctgggggtggatgt 42514033  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42514032 ggggggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggac 42513933  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  42513932 tcagtgttagacagatggctctggttacctaatca 42513898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 27116801 - 27117121
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             
T  27116801 agagatgggataggtgagggtggagggggatggtttgggtcttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtg--------- 27116891  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
       |||||||||| ||||||||||| ||||||||||||||||||||  |||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  27116892 ---gagatgttcctttgtgtgtccggtttaggcgcctttttgacttgtctgttcatcaatcagtctcagttaggaatatgttcctgctgggggtggatgt 27116988  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27116989 gggcggagaggcgttgaggtggcgtaggcggttgtgggcctgggaggaggggttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 27117088  T
Q  312 tcagtgatagacagatggctctggttacctaat 344  Q
    |||||||||||||||||||| ||||||||||||    
T  27117089 tcagtgatagacagatggctatggttacctaat 27117121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 28535303 - 28535631
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||    
T  28535303 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgtagaaacagatttttggcgggattgttggt 28535402  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||||||||||| ||||||| ||| ||||| ||||||| |||||| |||||  ||||  ||||||| ||||||||||||||| || |||||||||||||    
T  28535403 gtggagatgttcctttgtgtgaccgttttagtcgcctttatgacttgactgtgaacaatccaatctctgttaggaatatgttcttgttgggggtggatgt 28535502  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || |||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  28535503 cggtggggaggcgttgaggtggcgtaggtggttgtgggcttgagaggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaa 28535602  T
Q  312 tcagtgatagacagatggctctggttacc 340  Q
    ||| ||| ||| |||||||| ||||||||    
T  28535603 tcaatgacagatagatggctttggttacc 28535631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 31642023 - 31641695
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||    
T  31642023 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagatacagatttttggcgggattgttggt 31641924  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||| ||||||| ||||||| ||| ||||| ||||||| |||||| |||||  ||||| ||||||| |||||||| |||||| || |||||||||| ||    
T  31641923 gtggaaatgttcctttgtgtgaccggtttagtcgcctttatgacttgactgtgaacaaaccaatctctgttaggaacatgttcttgatgggggtggaggt 31641824  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  31641823 cggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaa 31641724  T
Q  312 tcagtgatagacagatggctctggttacc 340  Q
    ||||||| ||| |||||| | ||||||||    
T  31641723 tcagtgacagatagatggatttggttacc 31641695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 23238895 - 23238562
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||   ||||| ||||||||||||||| ||||||    
T  23238895 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatggtacggataccgatttttggcgtgatcgttggt 23238796  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | |||||||||||| |||||| ||| ||| |||| ||||||||||| | ||| |||||||||||||| ||||||||||||||| || |  |||||||| |    
T  23238795 gcggagatgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatcaatctccgttaggaatatgttcttg-ttagggtggattt 23238697  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  23238696 gggtggggaggcgttgcggtggcgtaggaggttgtgggccagggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaa 23238597  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| |||||||||||| ||| ||||||||||    
T  23238596 tcagtgacagacagatggctttgggtacctaatca 23238562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 35983419 - 35983753
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||| |||| ||| || |||||||||||||||||| |||    
T  35983419 agagatgggataggtgacggtggagagggttggtttggatcttgtgttaggaggagggtgggagacggtgcagaaacggatttttggcgtgattgtaggt 35983518  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  |||||| ||| ||||| ||||| | |||||| |||||  ||||| ||||||| ||||||||||||||| || ||||||||||||     
T  35983519 gtggagatgttcctatgtgtgaccgttttagtcgcctatatgacttgactgtgaacaaaccaatctctgttaggaatatgttcttgttgggggtggatga 35983618  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||    
T  35983619 gggtggggaggcgttgaggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtttagggctttattactaacagtttcattacaggaa 35983718  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| ||| |||| ||| |||||||| |||||    
T  35983719 tcagtgacagatagatagctttggttaccaaatca 35983753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 42928643 - 42928309
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| | ||| |||||||||||||||| || ||||  || || ||||||| ||||||||||||||    
T  42928643 agagatgggataggtgagggtggagagggctggtttggggcgtgttttaggaggagggtgggtgacggtgctgaaacagatttttagcgtgattgttggt 42928544  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | || ||||||||   ||||| ||| ||||| ||||| | ||||||  ||||| | ||||||||| ||||||||||||||||| || ||| || ||||||    
T  42928543 gcggtgatgttccgaggtgtgaccgttttagtcgcctatatgacttggctgttaataaatcaatcacagttaggaatatgttcttgttggaggcggatgt 42928444  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| |||  ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| || |||| ||| ||||||    
T  42928443 gggtggggaggcgttgcagtggcgtcggcggttgtgggcttgggaggaagagttggtagaggagtgtagggttttattacttaccgtttttttacaggaa 42928344  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| ||| |||||| | |||||||| |||||    
T  42928343 tcagtgacagatagatggttgtggttaccaaatca 42928309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 27795996 - 27795694
Alignment:
Q  12 agagatgggatag-gtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttgg 110  Q
    ||||||||||||| | |||||||| ||||||||||||| |  ||||||||||||||||||||| ||||| |  ||||||||||||||||| |||||||||    
T  27795996 agagatgggatagcgcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatggagctgatactgatttttggcgagattgttgg 27795897  T
Q  111 tgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatg 210  Q
    |||||   |||||| |||||||  || |||||||| |||| ||||||| || | || ||||||||| | |  ||||| |||||| || | |||||||| |    
T  27795896 tgtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagctatccataaatcaatcacggcgaggaacatgttcttgttaggggtggagg 27795797  T
Q  211 tgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
      || ||||  || | |  ||||||| | || || ||||  ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  27795796 atggtgggggagcgtggcagtggcgtcgccgattatgggtgtgggaggaggacttggtagaggagtgtagggctttattactaacagtttctttggagga 27795697  T
Q  311 atc 313  Q
    |||    
T  27795696 atc 27795694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 10777296 - 10777145
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||| |||||||||| ||||| |||||||    ||||||||||||||||||||| ||||| |  ||||||||||||||||| ||||||||||    
T  10777296 agagatgggatatgtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggt 10777197  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||| ||||    
T  10777196 gtggtagtgttccgttgtgtgtgcgttttaggcggctttatgatttagctgt 10777145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 8299812 - 8299961
Alignment:
Q  14 agatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgt 113  Q
    ||||||||||||||||||||| ||||| ||||||     ||||||||||||||||||||| ||||| |  ||||| ||||||||||| ||||||||||||    
T  8299812 agatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggtgt 8299911  T
Q  114 ggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||   ||||||||||||||| || |||||||| |||| ||| ||| ||||    
T  8299912 ggcagtgttccattgtgtgtgcgttttaggcggctttatgatttagctgt 8299961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 25857052 - 25857203
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||||||||| ||||| |  ||||| ||||||||||| ||||||||||    
T  25857052 agagatgggataggtgagggtggggagggatggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggt 25857151  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||| ||||    
T  25857152 gtggcagtgttccgttgtgtgtgcgttttaggcggctttatgatttagctgt 25857203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 310
Target Start/End: Complemental strand, 33170127 - 33169872
Alignment:
Q  55 gtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgcctttttga 154  Q
    ||||||||||   ||||||||| ||||  || ||||| |||||||||||||||||||||||| ||||||| || ||||| |||||||| || ||||||||    
T  33170127 gtgttaggagacaggtgggagacggtgctgagactgacttttggcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttga 33170028  T
Q  155 cttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgg 254  Q
     || || ||  |||||    || | |||||||| ||||||| | ||||  |||| || || |||| ||| | |  ||||||  | || ||||||| ||||    
T  33170027 tttgacagtcaacaaagttgtcacggttaggaacatgttccagttgggtttggaggttggtgggggggcgtggcagtggcgacgccgcttgtgggtttgg 33169928  T
Q  255 gaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    ||||| ||||||||||||||||||||||  || ||||| |||||| ||||||||||    
T  33169927 gaggacgagttggtagaggagtgtagggaattattacttacagttactttgcagga 33169872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 24408222 - 24408142
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    ||||||| | || ||||||||||||||||| ||||||||||||||||||||||   | ||||| |||||| ||||||||||    
T  24408222 gtggcgtcgtcgcttgtgggcttgggaggaagagttggtagaggagtgtagggaactattacttacagttactttgcagga 24408142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 310
Target Start/End: Original strand, 18089617 - 18089687
Alignment:
Q  240 cggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| | | ||||| |||||| | ||||||||    
T  18089617 cggttgtgggcttgggaggaaaagttgatagaggagtgtagggatcttttacttacagttacattgcagga 18089687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 20208551 - 20208621
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | ||||||| | ||| |||||||||| ||||||||||||  | |||||||||||||||||||    
T  20208551 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 20208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 18089392 - 18089494
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||| |||| |||||||| ||||| ||||||| | | ||||||||| |   |||||| ||||| |   |||||||||||||||||||||||| ||    
T  18089392 agagatgggttaggcgagggtgg-gaggggtggtttgtgtcgtgtgttaggcgtcaggtgggtgatggagcttatactgatttttggcgtgattgttagt 18089490  T
Q  112 gtgg 115  Q
    ||||    
T  18089491 gtgg 18089494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 23878398 - 23878445
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtg 277  Q
    |||||||||| |||||||||| ||||||||||| ||||||| ||||||    
T  23878398 gtggcgtaggaggttgtgggcgtgggaggaggatttggtagtggagtg 23878445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 27165789 - 27165856
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    |||||||||||| |||| |||||||||||| |||||||||  || ||||| | ||||| |||||||||    
T  27165789 ttgtgggcttggaaggaagagttggtagagtagtgtagggaattattactcatagtttatttgcagga 27165856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 476494 - 476456
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  476494 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 476456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 380182 - 380145
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtag 280  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  380182 ttgtgggcgtgggaggaggagttggtcgaggagtgtag 380145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 11574553 - 11574594
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 284  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  11574553 ttgtgggcgtgggaggaggagatgttagaggagtgtagggct 11574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 22095109 - 22095150
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 284  Q
    |||||||| ||||||||||||||| ||||||||| |||||||    
T  22095109 ttgtgggcgtgggaggaggagttgttagaggagtttagggct 22095150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 11908733 - 11909067
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  11908733 agagatgggataggtgagggtggagagggttggtttgggacatgtgttaggaggagggtgggagatggtgcagatactgatttttgacgtgattgttggt 11908832  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  11908833 gtggagatgttcctttgtgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcatgatgggggtggatgt 11908932  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11908933 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 11909032  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||||||||||||||||||    
T  11909033 tcagtgatagacagatggctctggttacctaatca 11909067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 6051115 - 6050781
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  6051115 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 6051016  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6051015 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 6050916  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6050915 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggac 6050816  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  6050815 tcagtgttagacagatggctctggttacctaatca 6050781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 35541561 - 35541227
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  35541561 agagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 35541462  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35541461 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 35541362  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35541361 gggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttttttgcaggaa 35541262  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  35541261 tcagtgttagacagatggctctggttacctaatca 35541227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 47622705 - 47623006
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||   |||| ||| ||||||||||||  |  ||||||||||||||||||||| ||||||   ||||||||||||||||| ||||||||||    
T  47622705 agagatgggataaacgaggatggggagggttggttttcggattgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgttggt 47622804  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||| |||||||| ||  |||  || ||||| || || | | | ||  | ||  |||||  |||| |  ||| || ||||||  || |||||||||| ||    
T  47622805 gtggtgatgttccgtttcgtgagcgctttagacggctatataatttggccgtcaacaaagtaatcacgattatgactatgtttttgttgggggtggaggt 47622904  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || || ||||  | |  ||||||| | ||||| ||||| |||||||||||  ||||||||||||||| |||||| ||||| |||| || ||||||||||    
T  47622905 tggtggtgaggtgtggtagtggcgtcgtcggttatgggcgtgggaggaggacctggtagaggagtgtaaggctttattactgacagcttttttgcaggaa 47623004  T
Q  312 tc 313  Q
    ||    
T  47623005 tc 47623006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 307
Target Start/End: Complemental strand, 2491649 - 2491429
Alignment:
Q  87 actgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttagga 186  Q
    ||||| || ||||||||||||||||||||||||||||| || ||||| |||||||| ||  ||||||  || || ||| |||||    || | ||||||     
T  2491649 actgacttctggcgtgattgttggtgtggagatgttccgttttgtgtgcgatttagacggttttttgttttgacagttaacaaagttgtcacggttaggt 2491550  T
Q  187 atatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||| | |||| ||||| |  || |||| ||| | |  ||||||| | || ||||||||||||||||| ||||||||||||||||||||||   |    
T  2491549 atatgttccagttgggtgtggaggctggtgggggggcgtggcagtggcgtcgtcgtttgtgggcttgggaggaagagttggtagaggagtgtagggtact 2491450  T
Q  287 gttactaacagtttctttgca 307  Q
     ||||| |||||| |||||||    
T  2491449 attacttacagttactttgca 2491429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 43388877 - 43388757
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||| ||||| ||||| ||||||   | ||||||||||||||||||||| ||||| |  ||| ||||||||||||| ||||||||||    
T  43388877 agagatgggataggtgatggtggggagggctggtttacaagttgtgttaggaggagggtgggggatggagctgatgctgatttttggcgagattgttggt 43388778  T
Q  112 gtggagatgttccattgtgtg 132  Q
    ||||   |||||| |||||||    
T  43388777 gtggtagtgttccgttgtgtg 43388757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 22191627 - 22191678
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  22191627 gtggcgtaggcggttgtgggcatgggaggaggagttggtaggggagtgtagg 22191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 51052698 - 51052658
Alignment:
Q  306 caggaatcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  51052698 caggaatcagtgatagacagatggctctggttacctaatca 51052658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 3074043 - 3073993
Alignment:
Q  231 tggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  3074043 tggcgtaggcggttgtgggcctgggaggaggagttgttaggggagtgtagg 3073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 21405132 - 21405081
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||||||||||||||||||| || |||||||||||| ||| ||||||||||    
T  21405132 gtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 21405081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 47106513 - 47106583
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||| || |||| | ||| |||| ||||||||||||||||||  | |||||||||||||||||||    
T  47106513 ggggaggcatggaagtggaggaggaggttatgggcttgggaggaggaggagttagaggagtgtagggcttt 47106583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 30110757 - 30110826
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctt 285  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | ||||||||||||||||||    
T  30110757 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctt 30110826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 17708287 - 17708220
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 283  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | ||||||||||||||||    
T  17708287 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 17708220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 33260515 - 33260618
Alignment:
Q  206 ggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 305  Q
    ||||||||| ||||| |||| || |||||| ||| || | | || |||||||||||||||| |||||||||||| |  ||| ||| |||||||| | |||    
T  33260515 ggatgtgggtggggaagcatggaagtggcgaaggaggctttaggtttgggaggaggagttgttagaggagtgtatgctttttttattaacagttacgttg 33260614  T
Q  306 cagg 309  Q
    ||||    
T  33260615 cagg 33260618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 33280674 - 33280777
Alignment:
Q  206 ggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 305  Q
    ||||||||| ||||| |||| || |||||| ||| || | | || |||||||||||||||| |||||||||||| |  ||| ||| |||||||| | |||    
T  33280674 ggatgtgggtggggaagcatggaagtggcgaaggaggctttaggtttgggaggaggagttgttagaggagtgtatgctttttttattaacagttacgttg 33280773  T
Q  306 cagg 309  Q
    ||||    
T  33280774 cagg 33280777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 43944291 - 43944353
Alignment:
Q  201 ggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggag 263  Q
    |||||||| | ||| |||||||| | |  |||||||||||||||||||| |||||||||||||    
T  43944291 ggggtggaggagggtggggaggcttggcagtggcgtaggcggttgtgggattgggaggaggag 43944353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 28358194 - 28358133
Alignment:
Q  220 aggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||| ||||||||||||  | |||||||| ||||| || ||| |||||||||||||||||    
T  28358194 aggcatggaggtggcgtagaagattgtgggcgtgggaagaagagatggtagaggagtgtagg 28358133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 52691780 - 52691715
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||| | ||| ||| | ||| |||| ||||| ||||||||||||||||| ||||||||||||    
T  52691780 ggggaggcttggagttggaggaggaggttatgggcgtgggaggaggagttggtggaggagtgtagg 52691715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 105471 - 105805
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  105471 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 105570  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105571 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 105670  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  105671 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggac 105770  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  105771 tcagtgttagacagatggctctggttacctaatca 105805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 8300315 - 8299981
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  8300315 agagatgggataggtgagggtggcgagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 8300216  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300215 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 8300116  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300115 gggcggggaggcgttgaggtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 8300016  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  8300015 tcagtgttagacagatggctctggttacctaatca 8299981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 7924898 - 7924564
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||| |||||||||| ||||| ||||||||| ||||||||| |||||| |||||| |||| | | ||||||||||| |||||||||||||||    
T  7924898 agagatgggatacgtgagggtggagagggatggtttgggtcttgtgttacgaggagagtgggacatggggcacatactgattttgggcgtgattgttggt 7924799  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||| ||  | |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7924798 gtggagatgtccctctttgtgtccggtttatgcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 7924699  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7924698 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggac 7924599  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  7924598 tcagtgttagacagatggctctggttacctaatca 7924564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 41664996 - 41665329
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttt-tggcgtgattgttgg 110  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||    
T  41664996 agagatgggatatgtgagggtggagagggttggtttgggacgtgtgttaggaggagggtgggagatggtgcagacactgattttttggcgtgatcgttgg 41665095  T
Q  111 tgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatg 210  Q
    ||  |||||||||| ||||||| ||| |||||||||||||||||||| | |||| ||| |||||| |||||||||||||||||| || ||||||||||||    
T  41665096 tgcagagatgttcctttgtgtgaccggtttaggcgcctttttgacttgaatgttaacagatcaatttcagttaggaatatgttcttgttgggggtggatg 41665195  T
Q  211 tgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    |||| |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  41665196 tgggtggggaggtgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggttttattactaacagtttctttacagga 41665295  T
Q  311 atcagtgatagacagatggctctggttacctaat 344  Q
    |||||||| ||||||||| || ||||||||||||    
T  41665296 atcagtgacagacagatgactttggttacctaat 41665329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 9923113 - 9922785
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| ||| || ||||||||||| ||||||||||    
T  9923113 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagagacagatttttggcgggattgttggt 9923014  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||||||||||   | ||||| ||||||| |||||| |||||  ||||| ||||||| |||||||| |||||| || |||||||||||||    
T  9923013 gtggagatgttccattgtgtgaatggtttagtcgcctttatgacttgactgtgaacaaaccaatctctgttaggaacatgttcttgttgggggtggatgt 9922914  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  9922913 cggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtctagggctttattactaacagtttcattgcaggaa 9922814  T
Q  312 tcagtgatagacagatggctctggttacc 340  Q
    ||||||| ||| |||||| | ||||||||    
T  9922813 tcagtgacagatagatggatttggttacc 9922785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 13396849 - 13396566
Alignment:
Q  63 aggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactg 162  Q
    ||||||||||||||||||| ||| | |||||||||||||||| ||||||| |||||||||||| |||||| ||| |||||||||||||||||||| | ||    
T  13396849 aggagggtgggagatggtgcagacattgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatg 13396750  T
Q  163 ttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggagga 262  Q
    || |||||||||| |||||||||||||||||| || |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  13396749 ttaacaaatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggagga 13396650  T
Q  263 gttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  13396649 gttggtagaggagtgtagggttttattactaacaatttctttgcaggaatcagtgacagacagatggctttggttacctaatca 13396566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 32267074 - 32266740
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||  |||||||||||||||||  |||||||||    
T  32267074 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggaaggtgggagatggtgcggatactgatttttggcggtattgttggt 32266975  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | |||||||||||| ||||||  || ||   ||| ||||||||||| | |||||||||||||||||| ||||| ||  | ||| || | |||||||||||    
T  32266974 gcggagatgttccactgtgtgctcggttagagcgtctttttgacttgagtgttcacaaatcaatctccgttagaaactttttcttgttcggggtggatgt 32266875  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  32266874 gggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaa 32266775  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||  |||||||||||| ||| ||||||||||    
T  32266774 tcagtgtcagacagatggctttgggtacctaatca 32266740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 169 - 344
Target Start/End: Complemental strand, 172458 - 172283
Alignment:
Q  169 aatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggt 268  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||    
T  172458 aatcagtctcagttaggaatatgttcctgctgagggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcctgggaggagaagttggt 172359  T
Q  269 agaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaat 344  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  172358 agaggagtgtagggctttgttactaatagtttctttgcaggaatcagtgatagacagatggctatggttacctaat 172283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 13879115 - 13879416
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||||||||||||| |  ||||||||||||||||||||| ||||  |  ||||||||||||||||| ||||||||||    
T  13879115 agagatgggataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatgaagctgatactgatttttggcgagattgttggt 13879214  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||   |||||| |||||||  || |||||||| |||| ||||||| || |  | ||||||||| | || ||||| |||||| || | |||||||| |     
T  13879215 gtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagctatcgataaatcaatcacggtgaggaacatgttcttgttcggggtggagga 13879314  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || ||||  || | |  ||||||| | ||||| ||||  ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  13879315 tggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttggtagaggagtgtagggctttattactaacagtctctttgcaggaa 13879414  T
Q  312 tc 313  Q
    ||    
T  13879415 tc 13879416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 25090899 - 25090598
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| ||||||||  |||||||||||  |  ||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||||    
T  25090899 agagatgggataggcgagggtggaaagggttggtttacggattgtgttaggaggagggtgggggatggagcagatactgatttttggcgagattgttggt 25090800  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||   |||||| |||||||  || |||||||| ||||||||||||||     | ||||||||| | || ||||| |||||| || |||||||||| |     
T  25090799 gtggtagtgttccgttgtgtgagcgctttaggcgactttttgacttaaccaccaataaatcaatcacggtgaggaacatgttcttgttgggggtggagga 25090700  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || ||||  || | |  ||||||| | || || | ||  ||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  25090699 tggtgggggagcgtggcagtggcgtcgccgtttattggtgtgggaggagaaattggtagaggagtgtagggctttattactaacagtctctttgcaggaa 25090600  T
Q  312 tc 313  Q
    ||    
T  25090599 tc 25090598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 17699992 - 17699841
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| |||||||    ||||||||||||||||||||| ||||| |  ||||||||||||||||| ||||||||||    
T  17699992 agagatgggataggtgagggtggggagggctggtttgcaggttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggt 17699893  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||||||||    
T  17699892 gtggtagtgttccgttgtgtgtgcgttttaggcggctttatgatttaactgt 17699841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 20824811 - 20824660
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||||||||| ||||| |  ||||| ||||||||||||||||||||||    
T  20824811 agagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgtgattgttggt 20824712  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||| ||||    
T  20824711 gtggtagtgttccgttgtgtgtgcgttttaggcggctttatgatttagctgt 20824660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 43270964 - 43270834
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||||| |||||||    |||||||||||||||||| || ||||| |  ||||| ||||||||||  || |||||||    
T  43270964 agagatgggataggcgagggtggggagggctggtttgcaggttgtgttaggaggagggtaggggatggagccgataccgatttttggccagactgttggt 43270865  T
Q  112 gtggagatgttccattgtgtgtccgatttag 142  Q
    ||||   |||||| |||||||| || |||||    
T  43270864 gtggtagtgttccgttgtgtgtgcgttttag 43270834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 2170803 - 2170697
Alignment:
Q  57 gttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgcctttttgact 156  Q
    ||||||||||||||||| ||| | || ||||| ||||||| ||| ||||||||||||||   |||||| || ||||| || |||||||| |||| ||| |    
T  2170803 gttaggaggagggtgggggatagagtcgataccgatttttagcgagattgttggtgtggtagtgttccgttatgtgtgcgttttaggcggctttatgatt 2170704  T
Q  157 taactgt 163  Q
    |||||||    
T  2170703 taactgt 2170697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 172667 - 172716
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttag 61  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  172667 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttag 172716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 42177180 - 42177280
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||   |||||||| |  ||||||||||||||||||||| ||||| |  || |  ||||||||||| ||||||||||    
T  42177180 agagatgggataggcgagggtgggga---ttggtttgcgggttgtgttaggaggagggtgggggatggggccgaaatcgatttttggcgagattgttggt 42177276  T
Q  112 gtgg 115  Q
    ||||    
T  42177277 gtgg 42177280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 12134610 - 12134566
Alignment:
Q  242 gttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  12134610 gttgtgggcgtgggaggaggacttggtagaggagtgtagggcttt 12134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 28993075 - 28993126
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||||| ||||||||||| ||||||||||||||||| ||| | ||||||||    
T  28993075 gtggcgtcggcggttgtggacttgggaggaggagttgttagggaagtgtagg 28993126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 17659139 - 17659073
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 282  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | |||||||||||||||    
T  17659139 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaggg 17659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 23680470 - 23680400
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | || |||| | ||| ||||||||| |||||||||||||  | |||||||||||||||||||    
T  23680470 ggggaggcgtggaagtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggcttt 23680400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 13200337 - 13200296
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggctttgttacta 293  Q
    |||||||||||||||||||||||||||| || ||| ||||||    
T  13200337 tgggaggaggagttggtagaggagtgtatggatttattacta 13200296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 15439465 - 15439412
Alignment:
Q  227 gaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtag 280  Q
    ||||||||| ||| | |||||||| ||||||||||||||||| | |||||||||    
T  15439465 gaggtggcggaggagattgtgggcgtgggaggaggagttggttgtggagtgtag 15439412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 15530769 - 15530716
Alignment:
Q  227 gaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtag 280  Q
    ||||||||| ||| | |||||||| ||||||||||||||||| | |||||||||    
T  15530769 gaggtggcggaggagattgtgggcgtgggaggaggagttggttgtggagtgtag 15530716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 25193397 - 25193332
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||| | ||| ||| | ||| ||||||||||  |||||||||||||||| ||||||||||||    
T  25193397 ggggaggcttggagttggaggaggaggttgtgggcgcgggaggaggagttggtggaggagtgtagg 25193332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 42177471 - 42177520
Alignment:
Q  266 ggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 315  Q
    |||||| |||||||||| ||| ||||||| ||| ||||||||||||||||    
T  42177471 ggtagaagagtgtagggatttattactaatagtctctttgcaggaatcag 42177520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 4937756 - 4938090
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  4937756 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 4937855  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4937856 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 4937955  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4937956 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggac 4938055  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  4938056 tcagtgttagacagatggctctggttacctaatca 4938090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 11276876 - 11277214
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||    
T  11276876 agagatgggataggtgagggtggagaggggtggtttgggtcttgtgttaggaggagggtgggagatggtgcagataccgatttttggtgtgatcgttggt 11276975  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgc----ctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtgg 207  Q
    | |||||||||||| |||||| ||| ||| ||||     ||||||||||| | |||  ||||||||||||||||||||||||||||| || |||||||||    
T  11276976 gcggagatgttccactgtgtgcccggtttgggcgtgcgtctttttgacttgaatgtagacaaatcaatctcagttaggaatatgttcttgttgggggtgg 11277075  T
Q  208 atgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgca 307  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  11277076 atgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgca 11277175  T
Q  308 ggaatcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||||||| |||||||||||| ||| ||||||||||    
T  11277176 ggaatcagtgacagacagatggctttgggtacctaatca 11277214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 47877495 - 47877161
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| || || ||||||||||| |||||||||| |||||||||||| |||| | | || ||||||||||||||| ||||||    
T  47877495 agagatgggataggcgagggtggagatggatggtttgggacgtgtgttaggatgagggtgggagacggtgcataaacagatttttggcgtgatcgttggt 47877396  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | |||||||||||| |||| | ||| ||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||||| || |||||||||| ||    
T  47877395 gcggagatgttccactgtgcgaccgttttagtcgcctttatgacttgactgttaacaaatcaatctcagttaggaatatgttcttgttgggggtggacgt 47877296  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||| |||||||||    
T  47877295 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtgtggggttttattactaacagtttccttgcaggaa 47877196  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| ||||||||| || ||||||||||||||    
T  47877195 tcagtgacagacagatgactttggttacctaatca 47877161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 17721147 - 17720819
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||| ||| || ||||||||| | ||||||||||    
T  17721147 agagatgggataggtgagggtggagagggttggtttgggtcttgtgttaggaggagggtgggagacggtgcagagacagatttttggtgggattgttggt 17721048  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||||||||| |||||||||  || ||||| ||||||| |||||| |||||  |||||  |||||| |||||||| ||| || || |||||||||||||    
T  17721047 gtggagatgtttcattgtgtgaacggtttagtcgcctttatgacttgactgtgaacaaactaatctctgttaggaacatgatcttgttgggggtggatgt 17720948  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||||||||||| |||||||||    
T  17720947 cggtggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaagagttggtagaggagtttanggctttattactaacagtttcattgcaggaa 17720848  T
Q  312 tcagtgatagacagatggctctggttacc 340  Q
    ||||||| ||| |||||| | ||||||||    
T  17720847 tcagtgacagatagatggatttggttacc 17720819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 29968486 - 29968152
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| || |||||| ||||||||||||||| ||||||||||||||  ||||| |||||||||||  |||||||||    
T  29968486 agagatgggataggtgagggtggagagggatgatttgggtcttgtgttaggaggaaggtgggagatggtgcggataccgatttttggcggaattgttggt 29968387  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | |||||||||||||||||||  || ||| || | ||||||||||| | |||||||||||||||||| ||||| ||  | ||| || |||||||||||||    
T  29968386 gcggagatgttccattgtgtgctcggtttgggagtctttttgacttgagtgttcacaaatcaatctccgttagaaactttttcttgttgggggtggatgt 29968287  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| ||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||    
T  29968286 gggtggggaggcgttgcggtggcgtaggaggttatgggcttgagaggaggaattggtagaggagtgtagggctttattgctaacagtttctttgcaggaa 29968187  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| |||||||||||| ||| ||||||||||    
T  29968186 tcagtgacagacagatggctttgggtacctaatca 29968152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 235066 - 235399
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||  ||  | | || ||||||||||||||| ||||||    
T  235066 agagatgggataggcgagggtggagagggctgatttgggacgtgtgttaggaggagggtgggagacagtacaaaaacagatttttggcgtgatcgttggt 235165  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | |||||||||||| |||||| ||| ||||| ||||||| ||||||  ||||| |||||||||||||||||| |||||||||| || ||||| |||| ||    
T  235166 gcggagatgttccactgtgtgaccgttttagtcgcctttatgacttggctgttaacaaatcaatctcagttatgaatatgttcttgttgggg-tggacgt 235264  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| ||||||||  ||| |||||||||||||||||  ||||||||||||||||||||| ||| |||||||||||||| || ||||||    
T  235265 gggtggggaggcgttgcggtggcgtcagcgattgtgggcttgggaggaaaagttggtagaggagtgtagggttttattactaacagtttccttacaggaa 235364  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| ||| ||||| || |||||||| |||||    
T  235365 tcagtgacagatagatgactttggttaccaaatca 235399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 137 - 343
Target Start/End: Complemental strand, 37919931 - 37919725
Alignment:
Q  137 atttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgt 236  Q
    ||||||||||||||||||||| | |||| | |||||||| |||||||| ||||||||| || |||||||||||||||| |||| ||  ||| ||||||||    
T  37919931 atttaggcgcctttttgacttgaatgttaaaaaatcaatttcagttagaaatatgttcttgttgggggtggatgtgggtgggggggtgttgcggtggcgt 37919832  T
Q  237 aggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggt 336  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| | ||| |||||| || |    
T  37919831 aggcggttgtgggcttgggaggagaagttggtagaggagtgtagagttttattactaacagtttctttgcaggaatcagtgacaaacatatggctttgat 37919732  T
Q  337 tacctaa 343  Q
    |||||||    
T  37919731 tacctaa 37919725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 31423114 - 31422918
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||||| ||||||| |  ||||||||||||||||||||  |||||  | || || ||||||||||| ||||||||||    
T  31423114 agagatgggataggcgagggtggggagggatggtttgcgggttgtgttaggaggagggtggaggatggaattgaaacggatttttggcgagattgttggt 31423015  T
Q  112 gtgg-agatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtgga 208  Q
    |||| ||| ||||| |||||||  ||||||||||| || | ||||||| ||||  | |||  |||| |||| ||||| ||| || || ||||||||||    
T  31423014 gtggtaga-gttccgttgtgtgagcgatttaggcggctatatgacttagctgtcaataaagtaatcacagtgaggaacatgctcttgttgggggtgga 31422918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 37255270 - 37254970
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||| |||||| |||||||  ||| ||||||||| |  ||||||||||||||||||||| ||||| |  || || ||||||||||| ||||||||||    
T  37255270 agagatgagataggcgagggtgaggagagttggtttgcgggttgtgttaggaggagggtgggggatggagccgaaaccgatttttggcgagattgttggt 37255171  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgct-gggggtggatg 210  Q
    | ||   ||||||  ||||||  || |||||||| || | ||| ||| ||||  | |||  |||| | || ||||| |||||| || | ||||||||| |    
T  37255170 gcggtagtgttccgctgtgtgagcgctttaggcggctatatgatttagctgtcaataaagtaatcacggtgaggaacatgttcttgttggggggtggagg 37255071  T
Q  211 tgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
      || |||| ||| | |  ||||||  | ||||| ||||  ||||||||||| |||||||| |||||||||| ||| |||||||||   |||||||||||    
T  37255070 atggtgggg-ggcgtggcagtggcgccgtcggttatgggtgtgggaggaggacttggtagaagagtgtagggatttattactaacaaactctttgcagga 37254972  T
Q  311 at 312  Q
    ||    
T  37254971 at 37254970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 17055823 - 17055772
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||||||||||||||||||| || |||||||||||| ||| ||||||||||    
T  17055823 gtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 17055772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 34232007 - 34231940
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 283  Q
    |||||||| |||| |||| ||||| |||||||||| ||||||||||||  | ||||||||||||||||    
T  34232007 ggggaggcgttgaagtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 34231940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 22819564 - 22819614
Alignment:
Q  231 tggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||||||| |||||||||| ||||||||||||||| ||| ||||||||||    
T  22819564 tggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtagg 22819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 27218966 - 27219022
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||| || ||||||| |||||| |||||| ||||||||||||||||| ||||    
T  27218966 gtggcgtagacgattgtgggtttgggaagaggagatggtagaggagtgtaggtcttt 27219022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 4344113 - 4344054
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgtt 289  Q
    |||||| ||||||||||||| ||||||||| | ||| || |||||||||||||| |||||    
T  4344113 gtggcgcaggcggttgtgggattgggaggaagcgttagtcgaggagtgtagggcgttgtt 4344054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 25619737 - 25619674
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcag 315  Q
    |||||||||||  ||||||| ||||||| || ||| ||||||||||  ||||||||||||||||    
T  25619737 tgggaggaggacctggtagaagagtgtaaggatttattactaacagactctttgcaggaatcag 25619674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 36363805 - 36363738
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    |||||||  |||||||| ||| || |||||||||||||||| || ||||| || ||||||||||||||    
T  36363805 ttgtgggtgtgggaggaagagctgctagaggagtgtagggcattattacttactgtttctttgcagga 36363738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 4077583 - 4077513
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | || |||| | ||| ||||||||||||||||||| |||  | |||||||||||||||||||    
T  4077583 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggcttt 4077513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 27854299 - 27854333
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggag 275  Q
    ||||||||||||||||||| |||||||||||||||    
T  27854299 ggttgtgggcttgggaggaagagttggtagaggag 27854333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 28173835 - 28173873
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  28173835 ttgtgggcgtgggaggaggagttggtagcggagtgtagg 28173873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 31422876 - 31422814
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 314  Q
    |||||||| || |||||||||||||||| |  ||| ||||||||||  |||||||||||||||    
T  31422876 tgggaggatgacttggtagaggagtgtatgaatttattactaacagactctttgcaggaatca 31422814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 45943123 - 45943089
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||||||||| |||||||||||||||||||    
T  45943123 tgggaggaggagttgctagaggagtgtagggcttt 45943089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 11339030 - 11338990
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||| |||||||||||  |||||||||||||||||    
T  11339030 ggttgtgggcgtgggaggaggaaatggtagaggagtgtagg 11338990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 27941353 - 27941389
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgta 279  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  27941353 ttgtgggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 23642219 - 23642553
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  23642219 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 23642318  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23642319 gtggagatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 23642418  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23642419 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggac 23642518  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  23642519 tcagtgttagacagatggctctggttacctaatca 23642553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 47419316 - 47418982
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  47419316 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 47419217  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| |||  ||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47419216 gtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatctcagttaggaatatgttcctgctgggggtggatgt 47419117  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||     
T  47419116 gggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggaggtggtagaggagtgtagggctttgttactaacaatttctttgcaggat 47419017  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| |||| |||||||||||||||||||||||    
T  47419016 tcagtgttagatagatggctctggttacctaatca 47418982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 19755779 - 19755445
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||||    
T  19755779 agagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggt 19755680  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | |||||||||||| |||||| ||| |||||||||||||||||||| | |||| |||||||||| ||| |||||||||||||| || |||||||||||||    
T  19755679 gcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgt 19755580  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  19755579 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaa 19755480  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| |||||||||||| ||||||||||||||    
T  19755479 tcagtgacagacagatggctttggttacctaatca 19755445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 19784027 - 19784361
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||||    
T  19784027 agagatgggataggtgagggtggagagggatggtttgggatgtgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggt 19784126  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | |||||||||||| |||||| ||| |||||||||||||||||||| | |||| |||||||||| ||| |||||||||||||| || |||||||||||||    
T  19784127 gcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgt 19784226  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  19784227 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaa 19784326  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||| |||||||||||| ||||||||||||||    
T  19784327 tcagtgacagacagatggctttggttacctaatca 19784361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 346
Target Start/End: Complemental strand, 15740730 - 15740399
Alignment:
Q  14 agatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgt 113  Q
    ||||| ||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||     
T  15740730 agatgagataggtgagggtggagagggatggtttgggtcttgtgt-aggaggagggtgggagatggtgcagatactgatttttggcgtgatcgttggtgc 15740632  T
Q  114 ggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgg 213  Q
    |||||||||||| |||||| ||| ||| |||| ||||||||||| | |||||||||||||||||| ||||||||||| ||| || ||||||| || ||||    
T  15740631 ggagatgttccactgtgtgcccggtttgggcgtctttttgacttgaatgttcacaaatcaatctctgttaggaatatattcttgttgggggtagacgtgg 15740532  T
Q  214 gcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatc 313  Q
    | |||||||| |||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15740531 gaggggaggcgttgcagtggcataggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatc 15740432  T
Q  314 agtgatagacagatggctctggttacctaatca 346  Q
    ||||| |||||||||||| ||||||||||||||    
T  15740431 agtgacagacagatggctttggttacctaatca 15740399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 1828168 - 1828502
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||    
T  1828168 agagatgggataggtgagggtggtgagggatggtttgggtcttgtgttaggaggagggtgggagatggtgcagacactgacttttggcgtgatcgttggt 1828267  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | ||||||| |||  |||||| ||| ||| |||| ||||||||||| | | |||||||||| ||||| ||||||||||||||| || ||||||| || ||    
T  1828268 gcggagatgctcccctgtgtgcccggtttgggcgtctttttgacttgagtattcacaaatctatctctgttaggaatatgttcttgttgggggtagacgt 1828367  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||     
T  1828368 gggaggggaggcgttgtggtggcataggcggttgtgggcttgggaggaggagttggtagaggagtggagggctttattactaacagtttctttgcaggat 1828467  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||  |||| |||||| ||||||||||||||    
T  1828468 tcagtgactgacaaatggctttggttacctaatca 1828502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 174 - 346
Target Start/End: Original strand, 47685685 - 47685857
Alignment:
Q  174 atctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagagg 273  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  47685685 atctcagttaggaatatgttcttgttgggggtggatgtgggcggggaggcattgaggtggcgtgggcggctgtgggcttgggaggaggagttggtagagg 47685784  T
Q  274 agtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  47685785 agtgtagggctttgttactaacagtttctttgcaggaatcggtgatagacagatggctttggttacctaatca 47685857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 54482787 - 54483088
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||| ||||||||| |  ||||||||||||||||||||| ||||| |  ||||| ||||||||||| ||||||||||    
T  54482787 agagatgggataggcgagggtggagagagttggtttgtggattgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 54482886  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||   |||||| |||||||  || |||||||  |||| ||||||| |  |  | ||||||||  | || ||||| |||||| || |||||||||| |     
T  54482887 gtggtagtgttcccttgtgtgagcgctttaggcatctttatgacttagccatcaataaatcaattacggtgaggaacatgttcttgttgggggtggagga 54482986  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || ||||  || | |  ||||||| | ||||| ||||  ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  54482987 tggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggatttggtagaggagtgtaggggtttattactaacagtctctttgcaggaa 54483086  T
Q  312 tc 313  Q
    ||    
T  54483087 tc 54483088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 48312606 - 48312307
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||| |||||| |||||||| ||||||||||||| |  ||||||||||||||||||||| ||||| |  ||||  ||||||||||| ||||||||||    
T  48312606 agagatgagataggcgagggtggagagggttggtttgtggattgtgttaggaggagggtgggggatggagctgatatcgatttttggcgagattgttggt 48312507  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||  ||||||| |||||||  || |||||||| |||| ||||||| |  |  | ||||||||| | || ||||| |||||| || |||||||||| |     
T  48312506 gtgg-tatgttccgttgtgtgagcgctttaggcgactttatgacttagccatcaataaatcaatcacggtgaggaacatgttcttgttgggggtggagga 48312408  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || |||| ||| | |  ||||||| | ||||| | ||  || |||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  48312407 tggtgggggggcgtggcagtggcgtcgccggttattggtgtgtgaggaggacttggtagaggagtgtagggctttattactaacagtctatttgcaggaa 48312308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 340
Target Start/End: Original strand, 2821662 - 2821993
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| |||||||||||||    ||||||||||||||||||||| ||||| |  ||||| ||||||||||| ||||||||||    
T  2821662 agagatgggataggcgagggtggggagggttggtttgcagattgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 2821761  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||   |||||| |||||||  || |||||||| |||| ||||||| |  |  | ||| ||||| | || ||||| |||||| || |||||||||| |     
T  2821762 gtggtagtgttccgttgtgtgagcgctttaggcgtctttatgacttagccatcaataaagcaatcacggtaaggaacatgttcttgttgggggtggagga 2821861  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggagg---agttggtagaggagtgtagggctttgttactaacagtttctttgcag 308  Q
     || ||||  || | | |||||||| | || || ||||  ||||||||||   | |||||||||||||||||||||||  |||||||||| |||||||||    
T  2821862 tggtgggggagcgtggtggtggcgtcgccgcttatgggtgtgggaggaggaccaattggtagaggagtgtagggctttaatactaacagtctctttgcag 2821961  T
Q  309 gaatcagtgatagacagatggctctggttacc 340  Q
    ||||| || |  ||||||||| | ||||||||    
T  2821962 gaatctgttactgacagatgggtgtggttacc 2821993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 5789720 - 5789865
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||||| ||||||| | | |||||||| ||||||||| | ||||| |   ||| |||||||||||||||||||||||    
T  5789720 agagatgggataggcgagggtggggagggatggtttgcgtcgtgtgttagtaggagggtgcgggatggagccaatattgatttttggcgtgattgttggt 5789819  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgactt 157  Q
    ||||| ||||||| |||||||| || ||||| ||||| | ||||||    
T  5789820 gtggaaatgttccgttgtgtgtgcgttttagacgcctatatgactt 5789865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 55725333 - 55725530
Alignment:
Q  11 cagagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttgg 110  Q
    ||||||||||||||| |||||||| ||||||||||||| |  ||||||||||| ||||||||||||||| |     || ||||||||||| |||||||||    
T  55725333 cagagatgggataggcgagggtggggagggttggtttgcggattgtgttaggatgagggtgggagatggagccacaacagatttttggcgagattgttgg 55725432  T
Q  111 tgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtgga 208  Q
    |||||   |||||| ||||||   || |||||||| || | ||||||| ||||  | |||  |||| |||| ||||| |||||| || ||||||||||    
T  55725433 tgtggtagtgttcctttgtgtaagcgctttaggcgactatatgacttagctgtcaataaagtaatcacagtaaggaacatgttcttgttgggggtgga 55725530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 23647877 - 23647939
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtggga 74  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||    
T  23647877 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtggga 23647939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 46146187 - 46146040
Alignment:
Q  14 agatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgatt-gttggtg 112  Q
    |||||||||||| ||||| || || ||||||||||   |  ||||||||||   ||||||||| ||||  || ||||| ||||||||||||| |||||||    
T  46146187 agatgggataggagagggcggagatggttggtttgcatcgggtgttaggagacaggtgggagacggtgctgagactgacttttggcgtgatttgttggtg 46146088  T
Q  113 tggagatgttccattgtgtgtccgatttaggcgcctttttgacttaac 160  Q
    |||| ||||||| || ||||| |||||||| || |||||||| |||||    
T  46146087 tggaaatgttccgttttgtgtgcgatttagacggctttttgatttaac 46146040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 19735363 - 19735475
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||| | ||||| || |||||| |||||| | |  ||||||||||   ||||||||| ||||  || ||||| ||||||| |||||||||||    
T  19735363 agagatgggataagagagggcggagagggtaggtttgtgtcgggtgttaggagacaggtgggagacggtgctgagactgacttttggcatgattgttggt 19735462  T
Q  112 gtggagatgttcc 124  Q
    ||||| |||||||    
T  19735463 gtggaaatgttcc 19735475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 11586826 - 11587124
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtt-tgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttgg 110  Q
    ||||||||||||||||||||||| | ||| ||||| | ||| |||||||||||||||||||   |||||    || |||||||| |||||||| ||||||    
T  11586826 agagatgggataggtgagggtggggtgggctggttctcgga-ttgtgttaggaggagggtgaaggatggatccgaaactgatttctggcgtgactgttgg 11586924  T
Q  111 tgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatg 210  Q
    ||||| ||||| ||||| ||||  || ||||| ||  | | |||| ||  |||  | ||| ||||| | |||| || ||||||  || ||||||||||||    
T  11586925 tgtggtgatgtcccattttgtgagcgctttagacggttatatgacatagttgtcaataaagcaatcgcggttatgactatgttattgttgggggtggatg 11587024  T
Q  211 tgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    | ||  ||||||| | |  ||||||  | || || ||||  || |||||| |  |  ||||||| ||||||||||| ||||| |||||||||||||||||    
T  11587025 ttggtagggaggcgtggcagtggcgccgtcgtttatgggtgtgagaggagaacctattagaggaatgtagggctttattactgacagtttctttgcagga 11587124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 20395879 - 20395834
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  20395879 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 20395834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 4640536 - 4640576
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  4640536 ggttgtgggcttgggaggaggacttgttagaggagtgtagg 4640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 29553599 - 29553642
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| ||||||||||||||| |||||||||||||| ||||    
T  29553599 ttgtgggcgtgggaggaggagttgttagaggagtgtaggacttt 29553642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 42778546 - 42778479
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 283  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | ||||||||||||||||    
T  42778546 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 42778479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 46145956 - 46145889
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    ||||||| ||||||||| ||||||| ||||||||||||||   | ||||| |||||| ||||||||||    
T  46145956 ttgtgggtttgggaggaagagttggcagaggagtgtagggaactattacttacagttactttgcagga 46145889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 49926125 - 49926168
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||    
T  49926125 ttgtgggcgtgggaggaggagttgttagtggagtgtagggcttt 49926168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 53486785 - 53486852
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 283  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | ||||||||||||||||    
T  53486785 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 53486852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 7098937 - 7098879
Alignment:
Q  69 gtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccatt 127  Q
    ||||||||||| || ||||||  |||||||| |||| |||||||||| |||||||||||    
T  7098937 gtgggagatggggtggatactcttttttggcatgatcgttggtgtggtgatgttccatt 7098879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 23657676 - 23657638
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  23657676 ttgtgggcgtgggaggaggagttgttagaggagtgtagg 23657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 46543272 - 46543222
Alignment:
Q  231 tggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||| || ||||||||||| |||||||||||| ||||||| |||||||||    
T  46543272 tggcggagacggttgtgggcgtgggaggaggagatggtagaagagtgtagg 46543222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 35324211 - 35324260
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgta 279  Q
    |||||||||| | |||||||||||||||||||| ||||||| | ||||||    
T  35324211 gtggcgtaggagattgtgggcttgggaggaggatttggtagtgaagtgta 35324260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 2364789 - 2364455
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  2364789 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 2364690  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||| ||||||||  | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364689 gtggtgatgttcctctttgtgtccggtttaggcgcctttttgacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 2364590  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364589 gggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 2364490  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| ||||||||||||||||||||||||||||    
T  2364489 tcagtgttagacagatggctctggttacctaatca 2364455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 19919857 - 19920191
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  19919857 agagatgggataggtgagggaggtgagggttggtttcagacttgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgctggt 19919956  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||| || |||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  19919957 gtggagctgatccattgtgtgtccgatttccgcgcctttttgacttgactgttcacaaatctatctcagttaggaatatgtttctgctgggggtggatgt 19920056  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19920057 gggcggggaggcattgaggtgtcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 19920156  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||||||||||||||||||    
T  19920157 tcagtgatagacagatggctctggttacctaatca 19920191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 10323199 - 10323533
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||    
T  10323199 agagatgggataggtgagggtggagagggatggtttgggtcttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggt 10323298  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||||||||||||  | |||||||| |||  ||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10323299 gtggagatgttcctctttgtgtccggtttccgcgcctttttggcttgtctgttcacaattcaatctcagttaggaatatgttcctgctgggggtggatgt 10323398  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10323399 gggcggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggat 10323498  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    |||||| |||| |||||||||| ||||||||||||    
T  10323499 tcagtgttagatagatggctctagttacctaatca 10323533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 34332443 - 34332777
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||  | ||||||||||||||| ||||||    
T  34332443 agagatgggataggtgagggtggagagggatggtttgggacgtgtgttaggaggagggtgggagatggtgcagactcagatttttggcgtgatcgttggt 34332542  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||| | ||||  |||||||||||||||||||||||||||| || ||||||||||  |    
T  34332543 gtggaaatgttccactgtgtgtccggtttaggcgcctttttgacttgaatgttatcaaatcaatctcagttaggaatatgttcttgttgggggtggacat 34332642  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34332643 gggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggttttattactaacagtttctttgcaggaa 34332742  T
Q  312 tcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||  |||||||||||| ||||||||||||||    
T  34332743 tcagtgtcagacagatggctttggttacctaatca 34332777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 188 - 346
Target Start/End: Complemental strand, 7313112 - 7312954
Alignment:
Q  188 tatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 287  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7313112 tatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 7313013  T
Q  288 ttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7313012 ttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca 7312954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 90 - 346
Target Start/End: Original strand, 40930245 - 40930490
Alignment:
Q  90 gatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaata 189  Q
    |||||||||| |||||||||||| | | ||||||||||||||| ||| ||||| ||||||| ||||||  ||||  ||||||||||||| ||||||||||    
T  40930245 gatttttggcatgattgttggtgcgtatatgttccattgtgtgaccgttttagtcgcctttatgacttggctgtgaacaaatcaatctctgttaggaata 40930344  T
Q  190 tgttcctgctggggg-tggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgt 288  Q
    ||||| || |||||| |||||||||| |||||||| ||| |||||            |||||||||||||| |||||||||||||||||||||| ||| |    
T  40930345 tgttcttgttggggggtggatgtgggtggggaggcgttgcggtgg------------tgggcttgggaggaagagttggtagaggagtgtagggttttat 40930432  T
Q  289 tactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||||||||||||||| |||||||||| | | |||||||| |||||||| |||||    
T  40930433 tactaacagtttctttgcaagaatcagtgacaaatagatggctttggttaccaaatca 40930490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 48569667 - 48569968
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||||||||||| |  ||||||||||||||||||||| ||||| |  ||||| ||||||||||  ||||||||||    
T  48569667 agagatgggataggtgagggtggggagggttggtttgtggattgtgttaggaggagggtgggggatggagctgataccgatttttggcaagattgttggt 48569766  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||   |||||  |||||||  || |||| ||| |||| ||||||| | ||  | ||| ||||| | || ||||| |||||| || ||||||| || |     
T  48569767 gtggtagtgttctgttgtgtgagcgctttatgcgtctttatgacttagccgtcaataaagcaatcacggtaaggaacatgttcttgttgggggttgagga 48569866  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || ||||  || | |  ||||||| | || || ||||  ||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||    
T  48569867 tggtgggggagcgtggcagtggcgtcgccgtttatgggtgtgggaggaggacttggtagaggagtgtagggctttactactaacagtctctttgcaggaa 48569966  T
Q  312 tc 313  Q
    ||    
T  48569967 tc 48569968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 229 - 338
Target Start/End: Complemental strand, 7032601 - 7032492
Alignment:
Q  229 ggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatg 328  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| | ||||||||||| |||||||| |||||    
T  7032601 ggtggcgtaggcgtttgtgggcttgggaggaagagttggtagaggagtttagggctttattactaacagttacattgcaggaatcggtgatagatagatg 7032502  T
Q  329 gctctggtta 338  Q
    ||| ||||||    
T  7032501 gctttggtta 7032492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 17097505 - 17097625
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||||| ||||||| | | |||||||||||  ||||||| || || |  ||||||||||||||||||||||||||||    
T  17097505 agagatgggataggcgagggtggggaggggtggtttgtgtcgtgtgttaggagacgggtgggggacggagctgatactgatttttggcgtgattgttggt 17097604  T
Q  112 gtggagatgttccattgtgtg 132  Q
    ||||  ||||||| |||||||    
T  17097605 gtggtaatgttccgttgtgtg 17097625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 55 - 310
Target Start/End: Original strand, 962834 - 963089
Alignment:
Q  55 gtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgcctttttga 154  Q
    ||||||||||   ||||||||| ||||  || ||||| | |||||||||||||||||||||| ||||||| || ||||| |||||||| || ||||||||    
T  962834 gtgttaggagacaggtgggagacggtgctgagactgactgttggcgtgattgttggtgtggaaatgttccgttttgtgtgcgatttagacggctttttga 962933  T
Q  155 cttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgg 254  Q
     || || ||  |||||    || |  ||||||| ||||||| | ||||  |||| || || |||| ||| | |  ||||||| | || ||||||| ||||    
T  962934 tttgacagtcaacaaagttgtcacgattaggaacatgttccagttgggtttggaggttggtgggggggcgtggcagtggcgtcgccgcttgtgggtttgg 963033  T
Q  255 gaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    ||||| || |||||||||||||||||||  || ||||| |||||| ||||||||||    
T  963034 gaggaagaattggtagaggagtgtagggaattattacttacagttactttgcagga 963089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 3141363 - 3141066
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||  | |||||||||||||      ||||||||||   ||||||||| ||||  || ||||| |||||||||||||||||||    
T  3141363 agagatgggataggagagggcagagagggttggtttgcattgggtgttaggagacaggtgggagacggtgctgagactgagttttggcgtgattgttggt 3141264  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||| |||||||||| ||||| |||||||| || || ||||| || || ||  |||||    || |||||||||| ||||||| | ||||  |||| ||    
T  3141263 gtggaaatgttccattttgtgtgcgatttagacggctctttgatttgacagtcaacaaagttgtcacagttaggaacatgttccagttgggtttggaggt 3141164  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
     || |||| |   | |  ||||||| | || ||||| | ||||||||| ||||||||||||||||||||||   | ||||| |||||| ||||||||||    
T  3141163 tggtgggg-gatgtggcagtggcgttgccgcttgtgagtttgggaggaagagttggtagaggagtgtagggaactattacttacagttactttgcagga 3141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 12341883 - 12342015
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||     |||||||| |||||||||||| ||||| |  |||||  |||||||||| ||||||||||    
T  12341883 agagatgggataggtgagggtggggagggctggtttacaggttgtgttaagaggagggtgggggatggagctgataccaatttttggcgagattgttggt 12341982  T
Q  112 gtggagatgttccattgtgtgtccgatttaggc 144  Q
    ||||   |||||| |||||||| || |||||||    
T  12341983 gtggtagtgttccgttgtgtgtgcgttttaggc 12342015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 15313094 - 15312973
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggagga-gggtgggagatggtgtagatactgatttttggcgtgattgttgg 110  Q
    ||||||| |||||| |||||||| ||||| ||||||| | | ||||||||||| | ||||||| ||||| |  ||||||||||||||| ||||| |||||    
T  15313094 agagatgagataggcgagggtggggagggatggtttgcgtcgtgtgttaggagaaagggtgggggatggagccgatactgatttttggtgtgatagttgg 15312995  T
Q  111 tgtggagatgttccattgtgtg 132  Q
    |||||  ||||||| |||||||    
T  15312994 tgtggtaatgttccgttgtgtg 15312973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 16179459 - 16179340
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||| | ||||||| | | |||||||| ||||||||||| |||||     |||||||||||||||| ||| ||||||    
T  16179459 agagatgggataggcgagggtggggagagatggtttgtgtcgtgtgttagtaggagggtgggggatggatccaatactgatttttggcgcgatagttggt 16179360  T
Q  112 gtggagatgttccattgtgt 131  Q
     ||||  |||||| ||||||    
T  16179359 atggaattgttcctttgtgt 16179340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 31547665 - 31547616
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgta 279  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  31547665 gtggcgtaggcggttgtgggcatgggaggaggagttgttaggggagtgta 31547616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 44888198 - 44888147
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||    
T  44888198 gtggcgtaggcggttgtgggcatgggaggaggaattgttaggggagtgtagg 44888147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 26010327 - 26010285
Alignment:
Q  244 tgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  26010327 tgtgggcttgggaggaggaattggtagaggagtgtaggacttt 26010285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 26846175 - 26846105
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | ||||||| | ||| |||||||||| ||||||||||||  | |||||||||||||||||||    
T  26846175 ggggaggcgtggaggtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 26846105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 47537576 - 47537506
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | |||||||||||||||||||    
T  47537576 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 47537506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 9510037 - 9509997
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  9510037 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9509997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 9518012 - 9517972
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  9518012 ggttgtgggcatgggaggaggagttggtagcggagtgtagg 9517972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 19890950 - 19890890
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaat 312  Q
    |||||||||||  ||||||| |||||| ||| ||| ||||||||||| |||||||||||||    
T  19890950 tgggaggaggacctggtagaagagtgtggggatttattactaacagtctctttgcaggaat 19890890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 15279873 - 15279803
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | || |||||||||  | |||||||||||||| |||||| ||||||||| ||||||| ||||    
T  15279873 ggggaggcgtggatgtggcgtagaagattgtgggcttgggaagaggagatggtagaggcgtgtaggtcttt 15279803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 29523390 - 29523500
Alignment:
Q  53 ttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgccttttt 152  Q
    |||||||| |||||||||||| ||||| |  ||||| ||||| | ||| ||||||||||||||   || ||| |||||||| || |||||||| |||| |    
T  29523390 ttgtgttaagaggagggtgggggatggagctgataccgatttgttgcgagattgttggtgtggtagtgctccgttgtgtgtgcgttttaggcggctttat 29523489  T
Q  153 gacttaactgt 163  Q
    || ||| ||||    
T  29523490 gatttagctgt 29523500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 31675211 - 31675173
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31675211 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31675173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 31921209 - 31921247
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31921209 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31921247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 19891189 - 19891056
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||| | |||||||  || ||||||||||    ||||||||||||||||||||| ||||| |  || |  ||||||| | | ||||||||||    
T  19891189 agagatgggataagcgagggtgaggaaggttggtttgcaggttgtgttaggaggagggtgggggatggagccgaaatcgattttttgtgagattgttggt 19891090  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcg 145  Q
    ||||   ||||||  ||||||  |||||||||||    
T  19891089 gtggtagtgttccgctgtgtgcgcgatttaggcg 19891056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 2756136 - 2756084
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 282  Q
    ||||||| | || ||||||| ||||||||| ||||| ||||||||||||||||    
T  2756136 gtggcgtcgccgcttgtgggtttgggaggaagagtttgtagaggagtgtaggg 2756084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 20531720 - 20531788
Alignment:
Q  54 tgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgtt 122  Q
    ||||| |||||||||||||| || || |  || ||| ||||||||||||| ||||||||||| ||||||    
T  20531720 tgtgtcaggaggagggtgggggacggggctgaaacttatttttggcgtgactgttggtgtggtgatgtt 20531788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 27924925 - 27924961
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgta 279  Q
    ||||||||||||||||||||| || ||||||||||||    
T  27924925 ttgtgggcttgggaggaggaggtgttagaggagtgta 27924961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 3764 - 3433
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||||| | || |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  3764 agagatgggataggtgagggtggagaggggtggtttgggtcctgcgttaggaggagggtgggagatggtgcggataccgatttttggcgtgattgttggt 3665  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    | ||||| |||||| |||||| ||| ||| |||| ||||||||||| | ||| |||||||| ||||| ||||||||||||||| || |||||||||||||    
T  3664 gcggagacgttccactgtgtgcccggtttgggcgtctttttgacttgagtgtacacaaatctatctccgttaggaatatgttcttgttgggggtggatgt 3565  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| |||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  3564 gggtggggaggcgttgcggtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttacaggaa 3465  T
Q  312 tcagtgatagacagatggctctggttacctaa 343  Q
    ||||||| |||||||||||| ||| |||||||    
T  3464 tcagtgacagacagatggctttgggtacctaa 3433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 118 - 346
Target Start/End: Complemental strand, 2554043 - 2553815
Alignment:
Q  118 atgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcgg 217  Q
    |||||||| | |||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| || |||||||||| ||||| ||    
T  2554043 atgttccactatgtgcccgatttaggcgcctttttgacttgaatgttcacaaatcaatcttagttaggaatatgttcttgttgggggtggacgtgggtgg 2553944  T
Q  218 ggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtg 317  Q
    ||| || ||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2553943 ggaagcgttgcggtggcgtaggcggttgtgggcttgggagtagaagttggtaaaggagtgtagggctttattactaacagtttctttgcaggaatcagtg 2553844  T
Q  318 atagacagatggctctggttacctaatca 346  Q
    | |||||||||||| || |||||||||||    
T  2553843 acagacagatggctttgattacctaatca 2553815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 148 - 346
Target Start/End: Complemental strand, 21168574 - 21168377
Alignment:
Q  148 tttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtg 247  Q
    |||||||||| | |||||||||||||||||| ||||||||||||||| || | ||| | || ||||| |||||||| ||| |||||||||||||||||||    
T  21168574 tttttgacttgaatgttcacaaatcaatctctgttaggaatatgttcttgttaggg-tagacgtgggaggggaggcgttgcggtggcgtaggcggttgtg 21168476  T
Q  248 ggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatca 346  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  21168475 ggcttgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatca 21168377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 24767060 - 24767346
Alignment:
Q  15 gatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtg 114  Q
    ||||||||| |||||||||| ||||| ||||||||| | |||||||||||||||||||| || ||||   | |  ||||||||||||||| ||||||| |    
T  24767060 gatgggatatgtgagggtggagagggctggtttggggcgtgtgttaggaggagggtgggtgacggtgctaaaatagatttttggcgtgatcgttggtgcg 24767159  T
Q  115 gagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtggg 214  Q
    | ||||||||| |||||| ||| ||||| ||||| | ||||||  ||||| ||||||||||| ||||||||||||||||| || |||| ||||| |||||    
T  24767160 gtgatgttccactgtgtgaccgttttagtcgcctatatgacttggctgttaacaaatcaatcacagttaggaatatgttcttgttgggcgtggacgtggg 24767259  T
Q  215 cggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttc 301  Q
     |||||||| ||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||    
T  24767260 tggggaggcgttgcggtggcgtcgacggttgtgggcttgggaggaagagttggtagaggagtgtagggttgtattactaacagtttc 24767346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 314
Target Start/End: Original strand, 15958465 - 15958743
Alignment:
Q  36 gagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtcc 135  Q
    ||||||||||||  |  ||||||||||||||||||||| |||||    || |||||||||||||||||||||||||||||  ||||||| || ||||  |    
T  15958465 gagggttggttttcggattgtgttaggaggagggtgggggatggatccgaaactgatttttggcgtgattgttggtgtggtaatgttccgttttgtgagc 15958564  T
Q  136 gatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcg 235  Q
      ||||| || || | ||| ||  ||||  |||||  |||| |||||||| |||||||| |||||| ||||||||| || |||||||| | |  || |||    
T  15958565 tctttagtcggctatatgatttggctgtcaacaaagtaatcacagttaggcatatgttcttgctggaggtggatgttggtggggaggcgtggcagttgcg 15958664  T
Q  236 taggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 314  Q
    | | || || ||||| ||| ||||  | ||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||    
T  15958665 tcgtcgtttatgggcgtggtaggaaaacttgttagaggaatgtagggttttattactgacagtttctttgcaggaatca 15958743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 2554118 - 2554049
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtg 81  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2554118 agagatgggataggtgagggtggagagggatggtttgggacttgtgttaggaggagggtgggagatggtg 2554049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 14372619 - 14372920
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||| ||||||| ||||||||| ||||||||||||  |  |||||| |||||||||||||| ||||||   ||||||||||||||||| ||||||||||    
T  14372619 agagacgggatagatgagggtggggagggttggttttcgggttgtgtcaggaggagggtgggggatggttccgatactgatttttggcgggattgttggt 14372718  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||  ||||||| ||  |||  |  ||||| ||  | | ||| ||  | ||  |||||  |||| | ||||| ||||||||  |  |||||||||| ||    
T  14372719 gtggtaatgttccgtttcgtgagcactttagacggttatatgatttggccgtcaacaaagtaatcacggttagaaatatgtttttattgggggtggaggt 14372818  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || || ||||| | || |||||||   ||||| ||||| ||||| |||||  | |||||||||||||||||||| ||||| ||||||||||||||||||    
T  14372819 tggtggtgaggcgtggaagtggcgtcatcggttatgggcgtgggacgaggacctagtagaggagtgtagggctttattactgacagtttctttgcaggaa 14372918  T
Q  312 tc 313  Q
    ||    
T  14372919 tc 14372920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 10576878 - 10577029
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||||||||| ||||| |  ||||| ||||||||| | ||||||||||    
T  10576878 agagatgggataggtgagggtggggagggctggtttataggttgtgttaggaggagggtgggggatggagctgataccgatttttggtgagattgttggt 10576977  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||||||||    
T  10576978 gtggtagtgttccgttgtgtgttcgttttaggcggctttatgatttaactgt 10577029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 17573284 - 17573435
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||||||||| ||||| |  ||||| ||||||||||| ||||||||||    
T  17573284 agagatgggataggtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggt 17573383  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||| ||||    
T  17573384 gtggtagtgttccgttgtgtgtgcgttttaggcggctttatgatttagctgt 17573435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 17605962 - 17606113
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    ||||||||||||||||||||||| ||||| ||||||     ||||||||||||||||||||| ||||| |  ||||| ||||||||||| ||||||||||    
T  17605962 agagatgggataggtgagggtggggagggctggtttacaggttgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggt 17606061  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||| ||||    
T  17606062 gtggtagtgttccgttgtgtgtgcgttttaggcggctttatgatttagctgt 17606113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 21629735 - 21629886
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||| |||||||||| ||||| ||||||     ||||||||||||||||||||| ||||| |  ||||  ||||||||||| ||||||||||    
T  21629735 agagatgggataagtgagggtggggagggctggttttcaggttgtgttaggaggagggtgggggatggagctgatatcgatttttggcgagattgttggt 21629834  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgt 163  Q
    ||||   |||||| |||||||| || |||||||| |||| ||| ||| ||||    
T  21629835 gtggtagtgttccgttgtgtgtgcgttttaggcggctttatgatttagctgt 21629886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 13938231 - 13938101
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| ||||| || |||||||||||||   |  ||||||||||   ||||||||||||||  || ||||| ||||| |||||||||||||    
T  13938231 agagatgggataggagagggaggagagggttggtttgcatcaggtgttaggagagaggtgggagatggtgctgagactgacttttgtcgtgattgttggt 13938132  T
Q  112 gtggagatgttccattgtgtgtccgatttag 142  Q
    ||||| ||||||| || ||||| ||||||||    
T  13938131 gtggaaatgttccgttttgtgtgcgatttag 13938101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 20882661 - 20882764
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| |||||||||||||    ||||||||||||||||||||| ||||| |  || ||  |||||||||| ||||||||||    
T  20882661 agagatgggataggcgagggtggggagggttggtttgcatgttgtgttaggaggagggtgggggatggagccgaaaccaatttttggcgagattgttggt 20882760  T
Q  112 gtgg 115  Q
    ||||    
T  20882761 gtgg 20882764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 13937994 - 13937914
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 310  Q
    ||||||| | || ||||||| ||||||||| ||||||||||||||||||||||  || ||||| |||||| ||||||||||    
T  13937994 gtggcgtcgccgcttgtgggtttgggaggaagagttggtagaggagtgtagggaattattacttacagttactttgcagga 13937914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 26514007 - 26513967
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26514007 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 26513967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 281
Target Start/End: Complemental strand, 33185898 - 33185678
Alignment:
Q  61 ggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaac 160  Q
    ||||||||||||| ||||| |  || ||||||||||||||||||||||||||||| |||||||| ||  |||  || | | | || |||| |||||| ||    
T  33185898 ggaggagggtgggggatggggctgaaactgatttttggcgtgattgttggtgtggtgatgttcctttccgtgagcgctctcgtcgtctttatgacttgac 33185799  T
Q  161 tgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggag 260  Q
    |||  |||||  |||| | |||||||| ||| ||||| ||||   ||| |  || |||||||| | |  ||| ||| | || |||||| | ||||||||     
T  33185798 tgtcaacaaagtaatcacggttaggaacatgctcctgttgggttgggaggatggtggggaggcgtggcagtgacgtcgccgtttgtggacatgggaggaa 33185699  T
Q  261 gagttggtagaggagtgtagg 281  Q
    |||||||||||||||||||||    
T  33185698 gagttggtagaggagtgtagg 33185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 340
Target Start/End: Original strand, 20882895 - 20882989
Alignment:
Q  246 tgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacc 340  Q
    ||||| |||||||||||  ||||||| | |||||||| ||| ||||||||||| ||||||||||||||||  | |||||| ||| | ||||||||    
T  20882895 tgggcgtgggaggaggacctggtagaagggtgtagggatttattactaacagtctctttgcaggaatcagaaacagacaggtggttgtggttacc 20882989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 649898 - 649968
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | |||||||||||||||||||    
T  649898 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 649968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 29055813 - 29055763
Alignment:
Q  231 tggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||||||||||||  | ||||||||||||||||| ||||||||||    
T  29055813 tggcgtaggcggttgtgggtctaggaggaggagttggtaggggagtgtagg 29055763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 18051306 - 18051351
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  18051306 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 18051351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 9199084 - 9199151
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggc 283  Q
    |||||||| | || |||| | ||| |||||||||||||||||||||||  | ||||||||||||||||    
T  9199084 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggc 9199151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 11462664 - 11462617
Alignment:
Q  267 gtagaggagtgtagggctttgttactaacagtttctttgcaggaatca 314  Q
    ||||| |||||||||| ||| ||||||||||| |||||||||||||||    
T  11462664 gtagaagagtgtagggatttattactaacagtctctttgcaggaatca 11462617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 18682401 - 18682455
Alignment:
Q  251 ttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 305  Q
    ||||||||| ||||||| |||||||||||||||| | ||||| |||||| |||||    
T  18682401 ttgggaggaagagttggcagaggagtgtagggctctattactcacagttactttg 18682455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 25318126 - 25318092
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||||||||| |||||||||||||||||||    
T  25318126 tgggaggaggagttgctagaggagtgtagggcttt 25318092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 26205620 - 26205586
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||||||||| |||||||||||||||||||    
T  26205620 tgggaggaggagttgctagaggagtgtagggcttt 26205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 333532 - 333577
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||| ||||| ||||||||| |||||||||||||| ||||    
T  333532 ggttgtgggcatgggatgaggagttgttagaggagtgtaggacttt 333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 5085885 - 5085926
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagggct 284  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  5085885 ttgtgggcgtgggaggaggagatgttagaggagtgtagggct 5085926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 17079048 - 17079093
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||    
T  17079048 ggttgtgggcttgggaggaggaggagttagaggagcgtagggcttt 17079093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 25350531 - 25350466
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||| | ||| ||| | ||| |||| ||||| ||||||||||||||||| ||||||||||||    
T  25350531 ggggaggcttggagttggaggaggaggttatgggcgtgggaggaggagttggtggaggagtgtagg 25350466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 11060694 - 11060757
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtaggg 282  Q
    |||||||| | || |||| | ||| ||||||||||||||||||||||||   |||||||||||||||    
T  11060694 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagt---tagaggagtgtaggg 11060757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 19350238 - 19350182
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||  | |||||||||| ||| |||||| ||||||||||||||||| ||||    
T  19350238 gtggcgtagaagattgtgggcttcggaagaggagatggtagaggagtgtaggtcttt 19350182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 23065903 - 23065947
Alignment:
Q  240 cggttgtgggcttgggaggaggagttggtagaggagtgtagggct 284  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  23065903 cggttgtgggcgtgggaggaggatttgctagaggagtgtaaggct 23065947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 29976861 - 29976917
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||  | |||||||||||||| ||||||  |||||||||||||||| ||||    
T  29976861 gtggcgtagaagattgtgggcttgggaagaggagacggtagaggagtgtaggtcttt 29976917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 313
Target Start/End: Complemental strand, 40177155 - 40176879
Alignment:
Q  37 agggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggtgtggagatgttccattgtgtgtccg 136  Q
    |||||||||||| |  ||||||||||||||||||||| ||||| || ||||| ||||||||| | ||||||||||||||   |||||| |||||||  ||    
T  40177155 agggttggtttgcggattgtgttaggaggagggtgggggatggagttgataccgatttttggtgagattgttggtgtggtagtgttccgttgtgtgaacg 40177056  T
Q  137 atttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgt 236  Q
     |||||||| |||| ||||||| |  |  | ||||||||| | || ||||| |||||| || |||||||||| |  || ||||  || | |  |||||||    
T  40177055 ctttaggcgactttatgacttagccatcaataaatcaatcacggtgaggaagatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgt 40176956  T
Q  237 aggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatc 313  Q
     | ||||| ||||  ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  40176955 cgccggttatgggtgtgggaggaggacttggtagaggagtgtagggctttattactaacagtctctttgcaggaatc 40176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 170 - 340
Target Start/End: Complemental strand, 41207370 - 41207200
Alignment:
Q  170 atcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggta 269  Q
    ||||||| ||||||||||||||||| || |||||||||||||||| |||||||| |||   |||||| | ||||||||||| |||||||| |||||||||    
T  41207370 atcaatcacagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcaatggcgtcgtcggttgtgggcatgggaggaagagttggta 41207271  T
Q  270 gaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacc 340  Q
    ||||||||||||| ||| ||| | |||||||| |||||||||||||||  ||| |||||| | ||||||||    
T  41207270 gaggagtgtagggttttattatttacagtttccttgcaggaatcagtggcagatagatggttgtggttacc 41207200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 28253232 - 28252931
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||  |||||||| ||||||||||||  |  ||||||||||||||||||||| ||||||   ||||||||||||||||| |||||| |||    
T  28253232 agagatgggatagacgagggtggggagggttggttttcggtttgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgtcggt 28253133  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    |||| |||||||  ||  |||  || ||||| || || | ||| ||  | ||  |||||  |||| | ||||||| ||||||  || |||||||||| ||    
T  28253132 gtggtgatgttctgtttcgtgagcgctttagacggctatatgatttggccgtcaacaaagtaatcacggttaggactatgtttttgttgggggtggaggt 28253033  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
     || || ||||| | |  ||||||| | ||||| ||||| |||||||| ||  | |||||||||||||||||||| ||||| ||||||| ||||||||||    
T  28253032 tggtggtgaggcgtggtagtggcgtcgtcggttatgggcatgggaggatgacctagtagaggagtgtagggctttattactgacagtttttttgcaggaa 28252933  T
Q  312 tc 313  Q
    ||    
T  28252932 tc 28252931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 12646048 - 12645749
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| |||| |||||||| |  ||||||||||||||||||||||||||| |     || ||||||||||| ||||||||||    
T  12646048 agagatgggataggcgagggtggggaggattggtttgcggattgtgttaggaggagggtgggagatggagccacaacagatttttggcgagattgttggt 12645949  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcgcctttttgacttaactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgt 211  Q
    ||||   |||||| |||||||  || |||||||| || | ||||||| ||||  | |||  |||| |||| ||||| |||||| || |||||||||| |     
T  12645948 gtggtagtgttcctttgtgtgagcgctttaggcgactatatgacttagctgtcaataaagtaatcacagtaaggaacatgttcttgttgggggtggagga 12645849  T
Q  212 gggcggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    ||| || |  || | |  ||||||  | || || ||||  ||| ||||||| ||||||||||||||||||| ||| ||||||||| | ||||||||||||    
T  12645848 gggtggaggagcgtggcagtggcgacgtcgtttatgggtgtggaaggaggatttggtagaggagtgtagggatttattactaacaatctctttgcaggaa 12645749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 14440256 - 14440125
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtgattgttggt 111  Q
    |||||||||||||| |||||||| ||||| |||||||    ||||||  ||||||||||| | ||||| |  ||||| ||| ||||||| ||||||||||    
T  14440256 agagatgggataggcgagggtggggagggctggtttgcaggttgtgt--ggaggagggtgagggatggagccgataccgatatttggcgagattgttggt 14440159  T
Q  112 gtggagatgttccattgtgtgtccgatttaggcg 145  Q
    ||||   |||||| |||||||| || ||||||||    
T  14440158 gtggtagtgttccgttgtgtgtgcgttttaggcg 14440125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 18844465 - 18844530
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||| | ||| ||| | ||| |||||||||| ||||||||||||||||| ||||||||||||    
T  18844465 ggggaggcttggagttggaggaggaggttgtgggcgtgggaggaggagttggtggaggagtgtagg 18844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 33515841 - 33515902
Alignment:
Q  18 gggataggtgagggtggcgagggttggtttgggacttgtgttaggaggagggtgggagatgg 79  Q
    |||||| |||||||||| ||||||||||||  |  ||||||||||||||||||||| |||||    
T  33515841 gggatatgtgagggtggggagggttggtttacggattgtgttaggaggagggtgggggatgg 33515902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 36804195 - 36804150
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||| ||||||||||| ||| |||||||||||||||||||    
T  36804195 ggttgtgggcgtgggaggaggacttgttagaggagtgtagggcttt 36804150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 12807996 - 12808044
Alignment:
Q  230 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgt 278  Q
    |||| ||||| |||||||||| |||||||||| ||||||||||||||||    
T  12807996 gtggtgtaggaggttgtgggcgtgggaggaggcgttggtagaggagtgt 12808044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 38604247 - 38604306
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaa 311  Q
    |||||||| || ||||||||||||||||||  |||  |||| ||||||||||||||||||    
T  38604247 tgggaggaagacttggtagaggagtgtaggaatttagtacttacagtttctttgcaggaa 38604306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 16315622 - 16315672
Alignment:
Q  231 tggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    ||||||||  |||||||||| ||||||||||  ||||||||||||||||||    
T  16315622 tggcgtagtaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 16315672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 22052899 - 22052865
Alignment:
Q  252 tgggaggaggagttggtagaggagtgtagggcttt 286  Q
    ||||||||||||||| |||||||||||||||||||    
T  22052899 tgggaggaggagttgctagaggagtgtagggcttt 22052865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 44547706 - 44547756
Alignment:
Q  242 gttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 292  Q
    ||||| ||| |||||||||||||||||||||||||||| | |||| |||||    
T  44547706 gttgttggcatgggaggaggagttggtagaggagtgtatgactttattact 44547756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 32991314 - 32991379
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||| | || |||||| ||| | |||||||  |||||||||| |||||||||||||||||||    
T  32991314 ggggaggcttggaagtggcgaaggggattgtgggtgtgggaggaggcgttggtagaggagtgtagg 32991379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 36804410 - 36804365
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||| ||| ||||||||||| ||| |||||||||||||||||||    
T  36804410 ggttgtaggcgtgggaggaggacttgttagaggagtgtagggcttt 36804365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 18489091 - 18489051
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||||| ||||||||||| || |||||||||||||||    
T  18489091 ggttgtgggcgtgggaggaggaattagtagaggagtgtagg 18489051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 31093536 - 31093468
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagg 309  Q
    |||| ||||| |||||||| ||||| ||||||||||||||| ||||  |||| || ||||| |||||||    
T  31093536 ggttatgggcgtgggaggatgagttagtagaggagtgtaggactttactactgactgtttcattgcagg 31093468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 7836 - 7766
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | ||||||| | ||| |||||||||| ||||||||||||  | |||||||||||||||||||    
T  7836 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 7766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 12770 - 12700
Alignment:
Q  216 ggggaggcattgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||| | ||||||| | ||| |||||||||| ||||||||||||  | |||||||||||||||||||    
T  12770 ggggaggcgtggaggtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 12700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 182412 - 182367
Alignment:
Q  241 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 286  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  182412 ggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 182367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 56 - 1
Alignment:
Q  12 agagatgggataggtgagggtggcgagggttggtttgggacttgtgttaggaggag 67  Q
    |||||||||||||| |||||||  ||||||||||||| |  |||||||||||||||    
T  56 agagatgggataggcgagggtgtggagggttggtttgcggattgtgttaggaggag 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 7949 - 7911
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  7949 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 7911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 34468 - 34506
Alignment:
Q  243 ttgtgggcttgggaggaggagttggtagaggagtgtagg 281  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34468 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 34506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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