View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19039_high_3 (Length: 327)

Name: NF19039_high_3
Description: NF19039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19039_high_3
NF19039_high_3
[»] chr1 (3 HSPs)
chr1 (153-304)||(8297155-8297306)
chr1 (153-300)||(8300737-8300884)
chr1 (153-255)||(18279341-18279443)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 153 - 304
Target Start/End: Complemental strand, 8297306 - 8297155
Alignment:
Q  153 tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaaggt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8297306 tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaaggt 8297207  T
Q  253 ggctgtgatggataattctttggtgtttattagatatttcaaaaacttgatg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8297206 ggctgtgatggataattctttggtgtttattagatatttcaaaaacttgatg 8297155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 153 - 300
Target Start/End: Complemental strand, 8300884 - 8300737
Alignment:
Q  153 tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaaggt 252  Q
    ||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  8300884 tgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggt 8300785  T
Q  253 ggctgtgatggataattctttggtgtttattagatatttcaaaaactt 300  Q
    || |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  8300784 ggttgtgttggataattctttgctgtttgttagatatatcaaaaactt 8300737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 153 - 255
Target Start/End: Original strand, 18279341 - 18279443
Alignment:
Q  153 tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaaggt 252  Q
    |||||||||||||||||| ||||||||||||||  || ||||||||||||||||  ||||||||||||||||| |||| | ||||||||||||| || ||    
T  18279341 tgttggctgagctaaataaatttatggaaaaagataatcaattggagaagaaggttgaaaatctggataatcttgatgtacaatggatgataatcaatgt 18279440  T
Q  253 ggc 255  Q
    |||    
T  18279441 ggc 18279443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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