View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19039_low_1 (Length: 318)
Name: NF19039_low_1
Description: NF19039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19039_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 5676094 - 5676384
Alignment:
| Q |
16 |
atcagtttttgatataaagattacctccacttataaatacattgtcaggtcatca--tattggatgttggactcttaacaatagcaaatgggctaagaaa |
113 |
Q |
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| T |
5676094 |
atcagtttttgagataaggattgcctccatttataaatacattgtcaggtcatcacatatttgatgtgggactcttaacaatagcaaatgggctaagaaa |
5676193 |
T |
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| Q |
114 |
aactttgaaaaacataacaaattgggtgtta---gttacaatttataagttgaaaactctcaaaggagaacaattacccgactatctcttaaaaaataca |
210 |
Q |
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| T |
5676194 |
aactttgaaaagcataacaaattgggtgttattagttacaatttataagttgaaaactctcaaaggagaacaattacccgactatctcttaaaaaataca |
5676293 |
T |
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| Q |
211 |
gttaccgactaaaaaaggtgcatgtacaccgtaaaaaatgatagtacatggatacatagagaaaataaaaaggaacatagttatttataaa |
301 |
Q |
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| T |
5676294 |
attaccgactaaaaaaggtgcatgtacaccgtaaaaaatgatagtacatggatacatagagaaaataaaaaagaacatggttatttataaa |
5676384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 5697087 - 5697179
Alignment:
| Q |
107 |
taagaaaaactttgaaaaacataacaaattgggtgttagttacaatttataagttgaaaactctcaaaggagaacaattacccgactatctct |
199 |
Q |
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| T |
5697087 |
taagaaaaactttgaaaagcataacaaattgagtgttagttacaatttataagttgaaaactctcagaagagaacaattacctgactatctct |
5697179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 5730277 - 5730359
Alignment:
| Q |
107 |
taagaaaaactttgaaaaacataacaaa-ttgggtgttagttacaatttataagttgaaaactctcaaaggagaacaattacc |
188 |
Q |
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| T |
5730277 |
taagaaaaactttgaaaagtataacaaaattgggtgttagttacgatttataagttcaaaactctcacaagagaacaattacc |
5730359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 5697252 - 5697304
Alignment:
| Q |
251 |
atagtacatggatacatagagaaaat-aaaaaggaac-atagttatttataaa |
301 |
Q |
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| T |
5697252 |
atagtacatggatacagagagaaaataaaaaaagaacaatagttatttataaa |
5697304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 12199741 - 12199775
Alignment:
| Q |
34 |
gattacctccacttataaatacattgtcaggtcat |
68 |
Q |
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| T |
12199741 |
gattacccccacttataaatacattgtcaggtcat |
12199775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 24346794 - 24346855
Alignment:
| Q |
35 |
attacctccacttataaatacattgtcaggtca--tcatattggatgttggactcttaacaa |
94 |
Q |
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| T |
24346794 |
attacccccacttataaatacattgtcaggccatgtcttattcgatgtgggactcttaacaa |
24346855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 11895979 - 11896007
Alignment:
| Q |
42 |
ccacttataaatacattgtcaggtcatca |
70 |
Q |
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| T |
11895979 |
ccacttataaatacattgtcaggtcatca |
11896007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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