View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_high_11 (Length: 328)
Name: NF1903_high_11
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_high_11 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 5823187 - 5822868
Alignment:
| Q |
8 |
gactgaaatgaatatcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtg |
107 |
Q |
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|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5823187 |
gactgagaagaatatcaatggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagacgaatgtgta |
5823088 |
T |
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| Q |
108 |
gaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctcta |
207 |
Q |
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| T |
5823087 |
gaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctcta |
5822988 |
T |
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| Q |
208 |
agtgtcccaatattgttgaccttttcttcaatttggctgctggcgcaggaaacaattgtttgttaatgctactattttatttaccttcatcacatacatt |
307 |
Q |
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| T |
5822987 |
agtgtcccaatattgttgaccttttctttaatttggctgctggagaaggtaacaattgtttgttaatgc-actattttatttaccatcatcacatacatt |
5822889 |
T |
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| Q |
308 |
tgtctaagtaaatgagaataa |
328 |
Q |
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| T |
5822888 |
tgtcaaagtcaatgagaataa |
5822868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 5828690 - 5829009
Alignment:
| Q |
8 |
gactgaaatgaatatcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtg |
107 |
Q |
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| T |
5828690 |
gactgagaagaatatcaatggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagatcaatgtgtg |
5828789 |
T |
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| Q |
108 |
gaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctcta |
207 |
Q |
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| T |
5828790 |
gaagcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctcta |
5828889 |
T |
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| Q |
208 |
agtgtcccaatattgttgaccttttcttcaatttggctgctggcgcaggaaacaattgtttgttaatgctactattttatttaccttcatcacatacatt |
307 |
Q |
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| T |
5828890 |
agtgtcccaatattgttgaccttttctttaatttggctgctggagaaggtaagacttgtttgttaatgc-actattttatttaccatcatcacatacatt |
5828988 |
T |
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| Q |
308 |
tgtctaagtaaatgagaataa |
328 |
Q |
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|||| |||| |||| |||||| |
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| T |
5828989 |
tgtcaaagtcaatgtgaataa |
5829009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 5833051 - 5832823
Alignment:
| Q |
22 |
tcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgt |
121 |
Q |
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| T |
5833051 |
tcaatggtgaaattgagtatcaatgtagaacatctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgt |
5832952 |
T |
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| Q |
122 |
tgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatatt |
221 |
Q |
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| T |
5832951 |
tgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcaccggcaaactttgctcaccagcttgttacaaaaagtgccctaacatt |
5832852 |
T |
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| Q |
222 |
gttgaccttttcttcaatttggctgctgg |
250 |
Q |
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| T |
5832851 |
gttgaccttttcttcaatatggctgctgg |
5832823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 24038658 - 24038443
Alignment:
| Q |
35 |
cgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttct |
134 |
Q |
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||||||||||||| | ||||| ||||| || ||||| |||| || | ||||||||||||||| ||||||||| |||||||||| ||||| || | || | |
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| T |
24038658 |
cgagtatcaatgtaggacatcagaagtagtgttggagcgaatggcgggatacatagagacagatcaatgtgtgaaagcatgtggagttgaaaggaatttt |
24038559 |
T |
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| Q |
135 |
gttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttct |
234 |
Q |
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| T |
24038558 |
gtcggaatttcttccgatgcattgcttgagccacaattcacagccaaactttgttcatcatcttgttaccaaaattgccccaatattgttgacctttact |
24038459 |
T |
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| Q |
235 |
tcaatttggctgctgg |
250 |
Q |
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|||||||||||||||| |
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| T |
24038458 |
tcaatttggctgctgg |
24038443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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