View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_high_12 (Length: 323)
Name: NF1903_high_12
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 33071481 - 33071187
Alignment:
| Q |
20 |
tattgttggtcaattggtcatatatatacgaaattcaagcaatttaggattagttactttgtgaaaaatannnnnnnnnnnnnnnnnnaaagtttgtgtt |
119 |
Q |
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| T |
33071481 |
tattgatggtcaattggtcatatatatacgaaattcaagcaatttaggattagttactttgtgaaaaatattttttattttcatttttaaagtttgtgtt |
33071382 |
T |
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| Q |
120 |
cattttaacttgctagtaaaaagatgtgagactcgtaattttacttttaatagcaaacttattactcctaaaaagaatagataggcagaagaggttctta |
219 |
Q |
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| T |
33071381 |
cattttaacttgctagtaaaaatatgtgagactcgtaaatttacttttaatagcaaacttattact---aaaaagaagagataggcagaagaggttctta |
33071285 |
T |
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| Q |
220 |
agaatatgatgaagtgcaagtagtattcaccattctcaaaagagaatcaactcaacgaccaaccaaaagaaaaacaaattacctcaaagtataatcta |
317 |
Q |
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| T |
33071284 |
agaatatgatgaagtgcaagtagtattcaccattctcaaaagagaatcaactcaacgaccaaccaaaagaaaaacaaattacctcaaagtataatcta |
33071187 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 29939092 - 29939056
Alignment:
| Q |
114 |
tgtgttcattttaacttgctagtaaaaagatgtgaga |
150 |
Q |
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| T |
29939092 |
tgtgttcaatttaacttgctaataaaaagatgtgaga |
29939056 |
T |
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