View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_high_14 (Length: 290)
Name: NF1903_high_14
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 49054290 - 49054032
Alignment:
| Q |
17 |
attatggttcaataagttaaccagactgcaatgtatttaggatcaaactggccatcgtgcccccattgaaccaattggtttgatttttaaaatacatcnn |
116 |
Q |
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| T |
49054290 |
attatggttcaattagttaaccagactgcaatatatttaggaccaaactggccatcgtgcccccattgaaccaattggtttgatttttaaaatacatctt |
49054191 |
T |
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| Q |
117 |
nnnnnnnaataatgcattctggatgtgatttgattcaacataccaattgcatgtcacagaatcacatggtctagttccactattttgtatcttactcatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49054190 |
tttttttaataatgcattctggatgtgatttgattcaacataccaattgcatgtcacagaatcacatggtctagttccactattttatatcttactcatc |
49054091 |
T |
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| Q |
217 |
atatctataatgaaagtttaccaaaaataataaccagaagtaattattataaaatgaatatt |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49054090 |
atatctataatgaaagtttaccaaaaataataaccagaagtaa---ttataaaatgaatatt |
49054032 |
T |
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