View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_high_23 (Length: 229)
Name: NF1903_high_23
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 43467620 - 43467423
Alignment:
| Q |
21 |
acaaggcacaagcgaagatgcattccattctg-aacagtaagcttttgatatcaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
119 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43467620 |
acaaggcacaggcgaagatgcattccattccataacagtaagcttttgataccaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
43467521 |
T |
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| Q |
120 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43467520 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcat |
43467423 |
T |
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Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 10644127 - 10643932
Alignment:
| Q |
21 |
acaaggcacaagcgaagatgcattccattctg-aacagtaagcttttgatatcaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
119 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10644127 |
acaaggcacaagcgaagatgcattccattccataacagtaagcttttgataccaaacaacaagatagaactaaaaatgagatcaatacactttggtttac |
10644028 |
T |
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| Q |
120 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10644027 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcaacttcactaactttt--tctttgtttgtgctattggcaagctaacatgttcttcat |
10643932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 23536231 - 23536035
Alignment:
| Q |
21 |
acaaggcacaagcgaagatgcattccattctg-aacagtaagcttttgatatcaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
119 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23536231 |
acaaggcgcaagcgaagatgcat-ccattccataacagtaaacttttgataccaaacagcaagatagaactaaaaatgagatcaatacactttggtttac |
23536133 |
T |
|
| Q |
120 |
ttgcagcttcgctaaagtcactgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcat |
217 |
Q |
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||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23536132 |
ttgaagcttcactaaagtcattgaatagttgtgctaacagcagcttcactaactttttctctttgtttgtgctattggcaagctaacatgttcttcat |
23536035 |
T |
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