View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1903_high_24 (Length: 220)

Name: NF1903_high_24
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1903_high_24
NF1903_high_24
[»] scaffold0657 (1 HSPs)
scaffold0657 (9-41)||(4617-4649)
[»] chr6 (3 HSPs)
chr6 (9-41)||(17689739-17689771)
chr6 (9-41)||(27298535-27298567)
chr6 (9-41)||(29310810-29310842)
[»] chr4 (3 HSPs)
chr4 (9-41)||(5709244-5709276)
chr4 (9-41)||(26965381-26965413)
chr4 (9-41)||(19924968-19925000)
[»] chr3 (1 HSPs)
chr3 (9-39)||(13213196-13213226)
[»] scaffold1679 (1 HSPs)
scaffold1679 (9-41)||(483-515)
[»] scaffold0203 (1 HSPs)
scaffold0203 (9-41)||(28490-28522)


Alignment Details
Target: scaffold0657 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 4649 - 4617
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||||||||||||||||||||||||||||||||    
T  4649 gacatcatcaatatatcacatataatgatgttg 4617  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 17689739 - 17689771
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||||||||||||||||||||||||||||||||    
T  17689739 gacatcatcaatatatcacatataatgatgttg 17689771  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 27298567 - 27298535
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||||||||||||||||||||||||||||||||    
T  27298567 gacatcatcaatatatcacatataatgatgttg 27298535  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 29310842 - 29310810
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||||||||||||||||||||||||||||||||    
T  29310842 gacatcatcaatatatcacatataatgatgttg 29310810  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 5709276 - 5709244
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||||||||||||||||||||||||||||||||    
T  5709276 gacatcatcaatatatcacatataatgatgttg 5709244  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 26965413 - 26965381
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||||||||||||||||||||||||||||||||    
T  26965413 gacatcatcaatatatcacatataatgatgttg 26965381  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 19924968 - 19925000
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||| ||||||||||||||||||||||||||||    
T  19924968 gacaccatcaatatatcacatataatgatgttg 19925000  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 13213226 - 13213196
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgt 39  Q
    |||||||||||||||||||||||||||||||    
T  13213226 gacatcatcaatatatcacatataatgatgt 13213196  T

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Target: scaffold1679 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1679
Description:

Target: scaffold1679; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 515 - 483
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||| ||||||||||||||||||||||||||||    
T  515 gacaccatcaatatatcacatataatgatgttg 483  T

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Target: scaffold0203 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 28490 - 28522
Alignment:
Q  9 gacatcatcaatatatcacatataatgatgttg 41  Q
    |||||||||||||||||||||||||| ||||||    
T  28490 gacatcatcaatatatcacatataataatgttg 28522  T

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