View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1903_high_27 (Length: 213)
Name: NF1903_high_27
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 34752506 - 34752659
Alignment:
| Q |
1 |
cttttccttaaatttttcttatatgattcacatggaccgacacaaacacacaagtcaatgatatatgctctcatctcatattaacggaattttaaatttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
34752506 |
cttttccttaaatttttcttatatgattcacatggaccgacacaaacacacaagtcaatgatatatgctctcatctcatgttaacagaattttaaatttc |
34752605 |
T |
|
| Q |
101 |
tctgtcaatgaagcacataaataaaaaggagcatgttattaataaattcataac |
154 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34752606 |
tttgtcaatgaagcacataaataaaaaggagcatgttattaataaattcataac |
34752659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University