View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1903_high_3 (Length: 572)

Name: NF1903_high_3
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1903_high_3
NF1903_high_3
[»] chr2 (5 HSPs)
chr2 (228-561)||(36460713-36461047)
chr2 (1-228)||(36461476-36461703)
chr2 (311-438)||(31813577-31813704)
chr2 (337-410)||(34244783-34244855)
chr2 (45-128)||(14292535-14292618)
[»] chr4 (4 HSPs)
chr4 (344-438)||(10583123-10583216)
chr4 (45-123)||(32129655-32129733)
chr4 (337-437)||(4655624-4655724)
chr4 (156-228)||(10581603-10581675)
[»] chr7 (2 HSPs)
chr7 (351-438)||(31612294-31612381)
chr7 (337-432)||(7395751-7395848)
[»] chr3 (3 HSPs)
chr3 (52-128)||(21821996-21822072)
chr3 (336-419)||(48659338-48659421)
chr3 (346-395)||(54682995-54683045)
[»] chr1 (1 HSPs)
chr1 (45-136)||(12831498-12831590)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 228 - 561
Target Start/End: Complemental strand, 36461047 - 36460713
Alignment:
Q  228 aggttcaaggtttcatattcaagnnnnnnntcaaaatcttcttgatggagatgtctttgtgatgttttgacttagatcttggtgcatgtgcttgtcttac 327  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36461047 aggttcaaggtttcatattcaagaaaaaaatcaaaatcttcttgatggagatgtctttgtgatgttttgacttagatcttggcgcatgtgcttgtcttac 36460948  T
Q  328 tttgatatatattggcgtagtcatgtccaaaacctataaaaaggtatgggaaacatacataatagctttcggacatagtttacaaatataaattatattt 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36460947 tttgatatatattggcgtagtcatgtccaaaacctataaaaaggtatgggaaacatacataatagctttctgacatagtttacaaatataaattatattt 36460848  T
Q  428 atataaaattg--nnnnnnnnnnnnnnnattgaattacttacaaaaacaagttgataaatgctataaaatatgacgtaatttgcggcttatcaatcaata 525  Q
    |||||||||||                 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36460847 atataaaattgtttttttttttttttttattgaattacttac-aaaacaagttgataaatgctataaaatatgacgtaatttgccgcttatcaatcaata 36460749  T
Q  526 tacaaaatcaaaagagtgtttccatactcgagtata 561  Q
    |||||||| |||||||||||||||||||||||||||    
T  36460748 tacaaaatgaaaagagtgtttccatactcgagtata 36460713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36461703 - 36461476
Alignment:
Q  1 attgtatgtatagacctctttttatgcgttcgtccaatacacttaattcatttcatacattccaactcaacaacataatcactaatgaatcacacctaac 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36461703 attgtatctatagacctctttttatgcgttcgtccaatacacttaattcatttcatacattccaagtcaacaacataatcactaatgaatcacacctaac 36461604  T
Q  101 acacttatttacaagtaaataataaaattgaagaaccttttcttnnnnnnntaataattgaagaacatttgtgaacttgaactcacatccggcaattatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36461603 acacttatttacaagtaaataataaaattgaagaaccttttcttaaaaaataaataattgaagaacatttgtgaacttgaactcacatccgacaattatg 36461504  T
Q  201 ctaacattctaatcaagctaggcattca 228  Q
    ||||||||||||||||||||||||||||    
T  36461503 ctaacattctaatcaagctaggcattca 36461476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 311 - 438
Target Start/End: Complemental strand, 31813704 - 31813577
Alignment:
Q  311 gcatgtgcttgtcttactttgatatatattggcgtagtcatgtccaaaacctataaaaaggtatgggaaacatacataatagctttcggacatagtttac 410  Q
    |||||| |||| ||| ||||| | |||||||| |||||||||||||||||||| ||||||||||||||| || | ||||||| |||  | ||||||||      
T  31813704 gcatgttcttgccttgctttgttctatattggtgtagtcatgtccaaaacctacaaaaaggtatgggaagcagatataatagttttttggcatagttttg 31813605  T
Q  411 aaatataaattatatttatataaaattg 438  Q
     ||||||||  ||||||||||| |||||    
T  31813604 caatataaacgatatttatatataattg 31813577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 34244783 - 34244855
Alignment:
Q  337 tattggcgtagtcatgtccaaaacctataaaaaggtatgggaaacatacataatagctttcggacatagtttac 410  Q
    |||||| ||||| |||||||||||||||||||| |||||| ||||| || ||||||||||| | ||||||||||    
T  34244783 tattggtgtagtgatgtccaaaacctataaaaa-gtatggaaaacagacgtaatagctttctggcatagtttac 34244855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 14292535 - 14292618
Alignment:
Q  45 aattcatttcatacattccaactcaacaacataatcactaatgaatcacacctaacacacttatttacaagtaaataataaaat 128  Q
    |||| ||||||||||||||||  ||| |||| ||  | |||||||||||||||||||||||| |||  ||||| ||||| ||||    
T  14292535 aatttatttcatacattccaagccaataacaaaactaataatgaatcacacctaacacacttctttgtaagtagataatgaaat 14292618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 344 - 438
Target Start/End: Complemental strand, 10583216 - 10583123
Alignment:
Q  344 gtagtcatgtccaaaacctataaaaaggtatgggaaacatacataatagctttcggacatagtttacaaatataaattatatttatataaaattg 438  Q
    ||||||||||| |||||||||||||||  || ||||||| ||  |||||||||| | ||||||||||| |||||||  |||||||||||||||||    
T  10583216 gtagtcatgtc-aaaacctataaaaagaaataggaaacaaacgaaatagctttctggcatagtttacatatataaacgatatttatataaaattg 10583123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 32129733 - 32129655
Alignment:
Q  45 aattcatttcatacattccaactcaacaacataatcactaatgaatcacacctaacacacttatttacaagtaaataat 123  Q
    ||||||||||||||||||||| |||| |||||||| | || ||||||| || |||||||||| |||| ||| |||||||    
T  32129733 aattcatttcatacattccaagtcaataacataattaatattgaatcatacataacacacttctttataagcaaataat 32129655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 437
Target Start/End: Original strand, 4655624 - 4655724
Alignment:
Q  337 tattggcgtagtcatgtccaaaacctataaaaaggtatgggaaacatacataatagctttcggacatagtttacaaatataaattatatttatataaaat 436  Q
    |||||| |||||||||  ||||||||||||||| |||||||||| | |  ||||| ||||  | || | ||||| ||||||||| |||||||||| ||||    
T  4655624 tattggtgtagtcatgctcaaaacctataaaaatgtatgggaaatagaagtaatatctttgtggcacaatttacgaatataaatgatatttatatcaaat 4655723  T
Q  437 t 437  Q
    |    
T  4655724 t 4655724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 10581675 - 10581603
Alignment:
Q  156 aattgaagaacatttgtgaacttgaactcacatccggcaattatgctaacattctaatcaagctaggcattca 228  Q
    ||||||||||||| |||| |||||| |||||||||   |||||||||||||| || |||||| ||| ||||||    
T  10581675 aattgaagaacatatgtggacttgagctcacatccaaaaattatgctaacatcctgatcaagttagacattca 10581603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 31612294 - 31612381
Alignment:
Q  351 tgtccaaaacctataaaaaggtatgggaaacatacataatagctttcggacatagtttacaaatataaattatatttatataaaattg 438  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||| | ||||||||||   |||||||| | |||||||||| |||||    
T  31612294 tgtccaaaacctacaaaaaggtgtgggaaactgacataatagcttcctgacatagttttgcaatataaactgtatttatatataattg 31612381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 7395751 - 7395848
Alignment:
Q  337 tattggcgtagtcatgtccaaaacctat--aaaaaggtatgggaaacatacataatagctttcggacatagtttacaaatataaattatatttatata 432  Q
    |||||| |||||||||| ||||||||||  |||||||||||||||| | |  ||||||||||  ||  |||||||||||||||||  ||||| |||||    
T  7395751 tattggtgtagtcatgttcaaaacctataaaaaaaggtatgggaaataaatgtaatagctttttgatgtagtttacaaatataaacgatattcatata 7395848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 21822072 - 21821996
Alignment:
Q  52 ttcatacattccaactcaacaacataatcactaatgaatcacacctaacacacttatttacaagtaaataataaaat 128  Q
    ||||| ||||||||  |||||||||||| | ||||||||||||||||||||||||| ||  ||||| ||||| ||||    
T  21822072 ttcatgcattccaatccaacaacataattaataatgaatcacacctaacacacttagttgtaagtagataatgaaat 21821996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 419
Target Start/End: Original strand, 48659338 - 48659421
Alignment:
Q  336 atattggcgtagtcatgtccaaaacctataaaaaggtatgggaaacatacataatagctttcggacatagtttacaaatataaa 419  Q
    |||||||||||||||||  |||||| |||||||| ||||| |||| | || |||||| |||| | | | |||||||||||||||    
T  48659338 atattggcgtagtcatgctcaaaacgtataaaaatgtatgagaaatagacgtaatagttttctgtcgttgtttacaaatataaa 48659421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 395
Target Start/End: Complemental strand, 54683045 - 54682995
Alignment:
Q  346 agtcatgtccaaaacctataaaaaggt-atgggaaacatacataatagctt 395  Q
    |||||||||||||||||| |||||||| | |||||||| ||||||||||||    
T  54683045 agtcatgtccaaaacctacaaaaaggtgaggggaaacaaacataatagctt 54682995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 12831498 - 12831590
Alignment:
Q  45 aattcatttcatacattccaactcaacaacataatcactaatgaatcacacctaacacacttatttacaagtaaataataaaat-tgaagaac 136  Q
    ||||||||||||||||||||| |||  |||| ||| | ||||||||||||| | |||||||| |||  ||||| ||||| |||| ||||||||    
T  12831498 aattcatttcatacattccaagtcagtaacaaaattaataatgaatcacacatgacacacttttttgtaagtagataatgaaatatgaagaac 12831590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University