View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1903_high_5 (Length: 443)

Name: NF1903_high_5
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1903_high_5
NF1903_high_5
[»] chr3 (1 HSPs)
chr3 (10-443)||(52828642-52829074)


Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 52828642 - 52829074
Alignment:
Q  10 catcatcaatctttgctaatttatgcaaataaagaatcatactagtctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828642 catcatcaatctttgctaatttatgcaaataaagaatcatactaatctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtga 52828741  T
Q  110 aatggtggttaatataaacttcaaaaaagaacaataatatgaacattttccatctgaataagaaagttggagatctttagcttctagaccgttaaacttc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52828742 aatggtggttaatataaacttcaaaaaagaacaataatatgaacattttccatctgaata-gaaagttggagatctttagcttctagaccgttaaacttc 52828840  T
Q  210 aagcaaccctatgtctaatatatagggtaccaattaatcaaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgaga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828841 aagcaaccctatgtctaatatatagggtaccaattaatcaaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgaga 52828940  T
Q  310 cattatagttttatcattctattgaaaatagtcactacaaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828941 cattatagttttatcattctattgaaaatagtcactacaaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtac 52829040  T
Q  410 ggctaatcacctattaacctaaacagttcatatt 443  Q
    ||||||||||||||||||||||||||||||||||    
T  52829041 ggctaatcacctattaacctaaacagttcatatt 52829074  T

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