View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_high_7 (Length: 370)
Name: NF1903_high_7
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_high_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 23342137 - 23341783
Alignment:
| Q |
1 |
ctgaagtgttctttgttttcaaagacaccgctaacagatttgtttttaaggggcaataaagaccgaaaaccgtcactagagaggccaagattcttctctt |
100 |
Q |
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| T |
23342137 |
ctgaagtgttctttgttttcaaagacactgctaacagatttgtttttaaggggcaataaagaccgaaaaccgtcactagagaggccaagattcttc---- |
23342042 |
T |
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| Q |
101 |
gcgataacatccaaatcacgttaaagcttgttacaagaaaatcggacaacaagtttttgtatgctcaaggggaacatgattttgctgatatgcttttaaa |
200 |
Q |
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| T |
23342041 |
-----------caaatcacgttaaagcttgttacaagaaaatcggacaacaagtttttgtatgctcaaggggaacatgattttgctgatatgcttttaaa |
23341953 |
T |
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| Q |
201 |
ttttcttgtttgtcctttggggggaattgtacgtttgttaggagggagttcactgggaagcattgatgctttgcatcatagcatagcttatttggatata |
300 |
Q |
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| T |
23341952 |
ttttctcgtttgtcctttggggggaattgtacgtttgttaggagggagttcactgggaagcattgatgctttgcatcatagcatagcttatttggatata |
23341853 |
T |
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| Q |
301 |
tgcaattttgtttcagaaaaagaaaaggacatgattgttgttcctcggttggcctatcaatatttccttt |
370 |
Q |
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| T |
23341852 |
tgcaattttgtttcagaaaaagaaaaggacatgattgttgttcctcgattggcctatcaatatttccttt |
23341783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23342266 - 23342174
Alignment:
| Q |
1 |
ctgaagtgttctttgttttcaaagacaccgctaacagatttgtttttaaggggcaataaagaccgaaaaccgtcactagagaggccaagattc |
93 |
Q |
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| T |
23342266 |
ctgaagtgttctttgttttcaaagacaccgctaacagatttgtttttaaggggcaataaagaccaaaaaccatcactagagaggccaagattc |
23342174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 23335515 - 23335434
Alignment:
| Q |
124 |
aagcttgttacaagaaaatcggacaacaagtttttgtatgctcaaggggaacatgattttgctgatatgcttttaaattttc |
205 |
Q |
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| T |
23335515 |
aagcttgttataagaaaatcagacagcaagttattgtatgctctaggggaacatgattttgcaaatatacttttaagttttc |
23335434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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