View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_low_11 (Length: 350)
Name: NF1903_low_11
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 8642693 - 8643022
Alignment:
| Q |
1 |
aaacataagactgcaaaaggattcatctaannnnnnnnnnggataaatcaagatgtttttcacacgtatttgtgaagactaatttcttgaaataattgag |
100 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
8642693 |
aaacataagactgcaaaaggattcatctaatttttttt--gggtaaatcaagatgtttttcacacatatttctgaagactaatttcttgaagtaattgag |
8642790 |
T |
|
| Q |
101 |
attcattttaattgaaatattttaaaacacattgttttagacacagtcacgtaattaagaattcgtgttggtatgcggtataggtttgcggtacgcgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8642791 |
attcattttaattgaaatattttaaaacacattgttttagacacagtcacgtaattaacaattcatgttggtatgcggtataggtttgcggtacgcgaca |
8642890 |
T |
|
| Q |
201 |
tgagacgaattcttatcatcttagcgatgtgtctaaaacatatttaaggaacccaactatttgtcatttgtgtcatgccatgcttaacggattattatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8642891 |
tgagacgaattcttatcatcttagcgatgtgtctaaaacatatttaaagaatccaactatttgtcatttgtgtcatgccatgcttaacggattattatca |
8642990 |
T |
|
| Q |
301 |
ttttagttatcctaaaattcacccttatatat |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
8642991 |
ttttagttatcctaaaattcacccttatatat |
8643022 |
T |
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