View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_low_12 (Length: 334)
Name: NF1903_low_12
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 72 - 324
Target Start/End: Complemental strand, 27775000 - 27774748
Alignment:
| Q |
72 |
ccaaccaccaggataactacggctgttgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaattataacattt |
171 |
Q |
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| T |
27775000 |
ccaaccaccaggataactacggctgttgtttatcttctttgttttcaattatatcaaacagacatgctattgttgttttttactacaaatgataacattt |
27774901 |
T |
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| Q |
172 |
gcatctactctaagatatttttccttacattgatttttatattgcagatgctgagggatgactcccttcccgtttgcttacctgagaaagtacatgatgt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27774900 |
gcatctactctaagatatttttccttacattgatttttatattgcagatgctgagggatgactcccttcctgtttgcttacctgagaaagtacatgatgt |
27774801 |
T |
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| Q |
272 |
gaaattgggcgactcagctgaggagagtactgctactcctgcaaccgatgatg |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27774800 |
gaaattgggcgactcagctgaggagagtactgctactcctgcaaccaatgatg |
27774748 |
T |
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