View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1903_low_13 (Length: 334)

Name: NF1903_low_13
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1903_low_13
NF1903_low_13
[»] chr8 (3 HSPs)
chr8 (158-291)||(37193273-37193406)
chr8 (158-291)||(37182143-37182274)
chr8 (209-285)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (157-291)||(21105366-21105500)
chr3 (225-291)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (162-289)||(10718-10845)
[»] chr6 (2 HSPs)
chr6 (162-289)||(10233990-10234117)
chr6 (164-232)||(4619835-4619903)
[»] scaffold0288 (1 HSPs)
scaffold0288 (164-232)||(969-1037)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 37193273 - 37193406
Alignment:
Q  158 agcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaa 257  Q
    ||||||||||||||||||||  |||||| ||||||||  |||||| ||||||||||||||  | |||||||||||||||| |||||||||||||||||||    
T  37193273 agcctgtgtttggaaactcatgaaaccacggtgaaaaatcacagtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaa 37193372  T
Q  258 cgtgcattagcggtcactcaccgcacaaacaaac 291  Q
    |||||| ||||| |||||||||||||||||||||    
T  37193373 cgtgcagtagcgatcactcaccgcacaaacaaac 37193406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 37182143 - 37182274
Alignment:
Q  158 agcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaa 257  Q
    ||||||||||||||||||||  ||| || ||||||||  ||  || ||||||||||||||  | |||||||||||||||| |||||||||||||||||||    
T  37182143 agcctgtgtttggaaactcatgaaaacacggtgaaaaatca--gtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaa 37182240  T
Q  258 cgtgcattagcggtcactcaccgcacaaacaaac 291  Q
    |||||| ||||| |||||||||||||||||||||    
T  37182241 cgtgcagtagcgatcactcaccgcacaaacaaac 37182274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 29461262 - 29461186
Alignment:
Q  209 aaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaa 285  Q
    |||||||||  | |||||||||||| |||| ||| |||| | || | |||||||  |||||||||||||||||||||    
T  29461262 aaagctacaccaactagcttctcaataccatggtaagatagactctaaacgtgcggtagcggtcactcaccgcacaa 29461186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 157 - 291
Target Start/End: Original strand, 21105366 - 21105500
Alignment:
Q  157 tagcctgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttga 256  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| || |||  |||||||||  | ||||||||| || ||||||||||||||| |||| |    
T  21105366 tagcatgtgtttgaaaactaacaaaaccatggtgaaaaggcacggttggcgtaaagctacaccaactagcttctaaataccacggtgagattgactttaa 21105465  T
Q  257 acgtgcattagcggtcactcaccgcacaaacaaac 291  Q
    || |||| |||||||||||||| ||||||||||||    
T  21105466 acatgcagtagcggtcactcacggcacaaacaaac 21105500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 42036775 - 42036841
Alignment:
Q  225 gcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaaacaaac 291  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||    
T  42036775 gcttctcaaaaccacggtgatattgactttgaatgtgcattagcggtcactcaccgcacaaataaac 42036841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 10845 - 10718
Alignment:
Q  162 tgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtg 261  Q
    |||||||| ||||||||||||||||||||||||  ||   || |||||||||| ||  | ||||||||||||||||||| | ||||||||||||||||||    
T  10845 tgtgtttgaaaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtg 10746  T
Q  262 cattagcggtcactcaccgcacaaacaa 289  Q
       |||||||||||||||| ||||||||    
T  10745 tggtagcggtcactcaccgtacaaacaa 10718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 10234117 - 10233990
Alignment:
Q  162 tgtgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtg 261  Q
    |||||||| ||||||||||||||||||||||||  ||   || |||||||||| ||  | ||||||||||||||||||| | ||||||||||||||||||    
T  10234117 tgtgtttgaaaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtg 10234018  T
Q  262 cattagcggtcactcaccgcacaaacaa 289  Q
       |||||||||||||||| ||||||||    
T  10234017 tggtagcggtcactcaccgtacaaacaa 10233990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 4619835 - 4619903
Alignment:
Q  164 tgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctca 232  Q
    |||||||| ||| ||||||||| |||||||||| || || |||  |||||||||  |||||||||||||    
T  4619835 tgtttggagactaacaaaaccaaggtgaaaaggtaccgttggcttaaagctacagtagctagcttctca 4619903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 1037 - 969
Alignment:
Q  164 tgtttggaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctca 232  Q
    |||||||| ||| ||||||||| |||||||||| || || |||  |||||||||  |||||||||||||    
T  1037 tgtttggagactaacaaaaccaaggtgaaaaggtaccgttggcttaaagctacagtagctagcttctca 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University