View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_low_19 (Length: 284)
Name: NF1903_low_19
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 42769595 - 42769331
Alignment:
| Q |
4 |
agaaaacacaaatcttttacaaaagctagctagtaacaaacatccattactacaaacatctatcaccatgttccatgtttatctcttcctcctctcactt |
103 |
Q |
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| T |
42769595 |
agaaaacacaaatcttttacaaaagctagctagtaacaaacatccattactacaaacatctatcaccatgttccatgtttatctcttcctcctctcactt |
42769496 |
T |
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| Q |
104 |
tccctatgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaacctttcaaaaatgcatgaatcttcctacacaacaag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769495 |
tccctatgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaacctttcaaaaatgcatgaatcttcctacacaacaag |
42769396 |
T |
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| Q |
204 |
cctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttc |
268 |
Q |
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| T |
42769395 |
cctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttc |
42769331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 110 - 261
Target Start/End: Original strand, 2452042 - 2452193
Alignment:
| Q |
110 |
tgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaacctttcaaaaatgcatgaatcttcctacacaacaagcctcaa |
209 |
Q |
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||||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||| |||||||| ||||||||||| || ||||||||||| | |
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| T |
2452042 |
tgtttccttcctcacattggtttttcatctcactgcactgtagaaacctctactaaaaccttccaaaaatgtatgaatcttcccacccaacaagcctcta |
2452141 |
T |
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| Q |
210 |
tagcatggactttacaccctcatagctccaccttagaactaattttctttgg |
261 |
Q |
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||||||||||||| ||||||||| |||||||||||||||| | |||||||| |
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| T |
2452142 |
tagcatggactttctaccctcataactccaccttagaactagtcttctttgg |
2452193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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