View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_low_20 (Length: 284)
Name: NF1903_low_20
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 54679465 - 54679706
Alignment:
| Q |
1 |
aatcctataagttagcttagcctnnnnnnntttataatattcgatacatatcattggaccctaacctcttttctctttctctatgaatcttcgttgnnnn |
100 |
Q |
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| T |
54679465 |
aatcctataagttagcttagcctaaaaaaatttataatattcgatacatatcattggaccctaaccttttttctctttctctatgaatcttcgttgtttt |
54679564 |
T |
|
| Q |
101 |
nnncttattttgacaaatgaatcttcannnnnnnnnnnaaggaaacaaatgaatcttcattgttaacgatttgaggcggtgtttatataaatctgcatgc |
200 |
Q |
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| T |
54679565 |
tt-cttattttgacaaatgaatcttcattttttttttgaaggaaacaaatgaatcttcattgttaacgatttgaggcggtgtttatataaatctgcatgc |
54679663 |
T |
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| Q |
201 |
attatataaattgcactgtttcatttataatccttttattatt |
243 |
Q |
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| T |
54679664 |
attatataaattgcactgtttcatttataatccttttattatt |
54679706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 54712269 - 54712368
Alignment:
| Q |
145 |
acaaatgaatcttcattgttaacgatttg-aggcggtgtttatataaatctgcatgcattatataaattgcactgtttcatttataatccttttattatt |
243 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |
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| T |
54712269 |
acaaatgaatcttcattgttaacaatttggaggcggtgtttatctaaatctgcatgcattatataaattgctctgtttcatttatcatccttttagtatt |
54712368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 54712194 - 54712283
Alignment:
| Q |
35 |
taatattcgatacatatcattggaccctaacctcttttctctttctctatgaatcttcgttgnnnnnnncttattttgacaaatgaatcttca |
127 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
54712194 |
taatattcgatacatatcattggaccctgacctctttcctctttctccatgaatcttcgttgttttt---ttattttgacaaatgaatcttca |
54712283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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