View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_low_24 (Length: 253)
Name: NF1903_low_24
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 31040290 - 31040521
Alignment:
| Q |
18 |
agtattcattcctgtggctaaatgggaaattaaaataaaatataggttttatattgagcttaaatcattttacaaaccgactcacaaaaataaggtgatg |
117 |
Q |
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| T |
31040290 |
agtattcattcctgtggctaaattggaaattaaaataaaatataggttttatattgagcttaaatcattttacaaaccgactcacaaaaataaggtgatg |
31040389 |
T |
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| Q |
118 |
attgttactgggcctgattctctaatattttgttgagtggcccatgtaatagcatattagttctttattttattttaatattgaggctaactcattttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31040390 |
attgttactgggcctgattctctaatattttgttgagtggcccatgtaatagcatattagttctttattttattttaatattgaggctaactcattttta |
31040489 |
T |
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| Q |
218 |
ttaaaataaaattataaagtttcatctcactc |
249 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
31040490 |
ttaaaataaaattataaagtttcatttcactc |
31040521 |
T |
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