View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1903_low_28 (Length: 235)

Name: NF1903_low_28
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1903_low_28
NF1903_low_28
[»] chr2 (21 HSPs)
chr2 (20-197)||(17104954-17105131)
chr2 (77-186)||(37771016-37771126)
chr2 (20-58)||(25762276-25762314)
chr2 (20-58)||(25766526-25766564)
chr2 (22-58)||(37987881-37987917)
chr2 (20-58)||(12209071-12209109)
chr2 (138-187)||(41087158-41087208)
chr2 (25-58)||(4137491-4137524)
chr2 (25-58)||(7724559-7724592)
chr2 (25-58)||(8373516-8373549)
chr2 (25-58)||(10333526-10333559)
chr2 (25-58)||(15177451-15177484)
chr2 (25-58)||(16126030-16126063)
chr2 (25-58)||(16127728-16127761)
chr2 (25-58)||(16333562-16333595)
chr2 (25-58)||(38963877-38963910)
chr2 (25-58)||(40471818-40471851)
chr2 (25-58)||(41319872-41319905)
chr2 (25-58)||(41436914-41436947)
chr2 (25-58)||(45036445-45036478)
chr2 (26-58)||(5030366-5030398)
[»] chr8 (29 HSPs)
chr8 (88-186)||(15821751-15821850)
chr8 (133-193)||(36630493-36630553)
chr8 (22-58)||(8058967-8059003)
chr8 (126-178)||(10248932-10248984)
chr8 (22-58)||(25009226-25009262)
chr8 (133-193)||(34389343-34389403)
chr8 (133-192)||(32066661-32066720)
chr8 (118-187)||(17657376-17657446)
chr8 (20-58)||(25118868-25118906)
chr8 (25-58)||(3466365-3466398)
chr8 (25-58)||(4327065-4327098)
chr8 (25-58)||(5777500-5777533)
chr8 (25-58)||(8123720-8123753)
chr8 (25-58)||(13888576-13888609)
chr8 (25-58)||(21133017-21133050)
chr8 (25-58)||(23437759-23437792)
chr8 (25-58)||(25691543-25691576)
chr8 (25-58)||(27301944-27301977)
chr8 (25-58)||(29616272-29616305)
chr8 (25-58)||(30464514-30464547)
chr8 (25-58)||(30653442-30653475)
chr8 (25-58)||(38842245-38842278)
chr8 (25-58)||(44039907-44039940)
chr8 (25-58)||(44871413-44871446)
chr8 (25-58)||(44887661-44887694)
chr8 (26-58)||(7431266-7431298)
chr8 (26-58)||(7603389-7603421)
chr8 (133-173)||(37987244-37987284)
chr8 (26-58)||(42786045-42786077)
[»] chr1 (28 HSPs)
chr1 (78-193)||(16147169-16147284)
chr1 (71-184)||(52278098-52278212)
chr1 (74-187)||(24658524-24658637)
chr1 (133-173)||(24450317-24450357)
chr1 (133-193)||(46693184-46693244)
chr1 (133-199)||(20113880-20113946)
chr1 (25-58)||(1821581-1821614)
chr1 (25-58)||(2138982-2139015)
chr1 (25-58)||(5606344-5606377)
chr1 (25-58)||(5945847-5945880)
chr1 (25-58)||(6017402-6017435)
chr1 (25-58)||(7075283-7075316)
chr1 (25-58)||(10100466-10100499)
chr1 (25-58)||(10648151-10648184)
chr1 (25-58)||(31651854-31651887)
chr1 (25-58)||(40058920-40058953)
chr1 (25-58)||(43453118-43453151)
chr1 (25-58)||(44741425-44741458)
chr1 (25-58)||(45299400-45299433)
chr1 (25-58)||(49903638-49903671)
chr1 (25-58)||(52688613-52688646)
chr1 (25-58)||(52749363-52749396)
chr1 (145-193)||(30686269-30686317)
chr1 (26-58)||(32968195-32968227)
chr1 (26-58)||(38786900-38786932)
chr1 (22-58)||(47912363-47912399)
chr1 (26-58)||(50295890-50295922)
chr1 (26-58)||(51924924-51924956)
[»] chr4 (18 HSPs)
chr4 (117-185)||(19672742-19672810)
chr4 (77-169)||(38639799-38639892)
chr4 (22-58)||(18881302-18881338)
chr4 (22-58)||(47834089-47834125)
chr4 (150-193)||(31051026-31051069)
chr4 (25-58)||(1613166-1613199)
chr4 (25-58)||(1981329-1981362)
chr4 (25-58)||(31152743-31152776)
chr4 (25-58)||(37164098-37164131)
chr4 (25-58)||(39260434-39260467)
chr4 (25-58)||(40411556-40411589)
chr4 (25-58)||(43047469-43047502)
chr4 (25-58)||(43447247-43447280)
chr4 (25-58)||(46608295-46608328)
chr4 (25-58)||(53987728-53987761)
chr4 (25-58)||(55631823-55631856)
chr4 (26-58)||(27976652-27976684)
chr4 (26-58)||(39195572-39195604)
[»] chr3 (30 HSPs)
chr3 (78-173)||(47235316-47235411)
chr3 (113-169)||(4464327-4464383)
chr3 (126-187)||(37123038-37123100)
chr3 (25-58)||(901032-901065)
chr3 (25-58)||(9484678-9484711)
chr3 (25-58)||(12948122-12948155)
chr3 (25-58)||(14751005-14751038)
chr3 (25-58)||(16434801-16434834)
chr3 (25-58)||(18013414-18013447)
chr3 (25-58)||(29455652-29455685)
chr3 (25-58)||(29793322-29793355)
chr3 (25-58)||(34263648-34263681)
chr3 (25-58)||(34555233-34555266)
chr3 (25-58)||(34669690-34669723)
chr3 (25-58)||(36179080-36179113)
chr3 (25-58)||(42098571-42098604)
chr3 (25-58)||(44821473-44821506)
chr3 (25-58)||(48927746-48927779)
chr3 (25-58)||(49076370-49076403)
chr3 (25-58)||(50673759-50673792)
chr3 (25-58)||(52094038-52094071)
chr3 (26-58)||(8437195-8437227)
chr3 (26-58)||(8440549-8440581)
chr3 (26-58)||(35322346-35322378)
chr3 (26-58)||(39099045-39099077)
chr3 (133-173)||(45163504-45163544)
chr3 (26-58)||(46866425-46866457)
chr3 (26-54)||(47638202-47638230)
chr3 (26-58)||(48690200-48690232)
chr3 (26-58)||(53274940-53274972)
[»] chr5 (24 HSPs)
chr5 (114-187)||(26046335-26046409)
chr5 (78-178)||(13954612-13954713)
chr5 (79-161)||(8297076-8297158)
chr5 (25-58)||(1098257-1098290)
chr5 (25-58)||(1781094-1781127)
chr5 (25-58)||(9936837-9936870)
chr5 (25-58)||(13548295-13548328)
chr5 (25-58)||(14057790-14057823)
chr5 (25-58)||(19344648-19344681)
chr5 (25-58)||(20022942-20022975)
chr5 (25-58)||(20040364-20040397)
chr5 (25-58)||(20502997-20503030)
chr5 (25-58)||(27674299-27674332)
chr5 (25-58)||(30211690-30211723)
chr5 (25-58)||(30721634-30721667)
chr5 (25-58)||(31191126-31191159)
chr5 (25-58)||(39925286-39925319)
chr5 (25-58)||(40316900-40316933)
chr5 (25-58)||(41263078-41263111)
chr5 (25-58)||(41410608-41410641)
chr5 (25-57)||(1918779-1918811)
chr5 (26-58)||(14633089-14633121)
chr5 (26-58)||(28143010-28143042)
chr5 (22-58)||(39035642-39035678)
[»] chr7 (20 HSPs)
chr7 (94-185)||(3477969-3478060)
chr7 (116-186)||(6584700-6584770)
chr7 (115-181)||(16954291-16954358)
chr7 (138-172)||(25160477-25160511)
chr7 (25-58)||(4088785-4088818)
chr7 (25-58)||(9173285-9173318)
chr7 (25-58)||(16807095-16807128)
chr7 (25-58)||(26651158-26651191)
chr7 (25-58)||(29247709-29247742)
chr7 (25-58)||(30462170-30462203)
chr7 (25-58)||(31496594-31496627)
chr7 (25-58)||(35265770-35265803)
chr7 (25-58)||(38069133-38069166)
chr7 (25-58)||(38353547-38353580)
chr7 (25-58)||(38850784-38850817)
chr7 (25-58)||(48448600-48448633)
chr7 (26-58)||(28016197-28016229)
chr7 (26-58)||(32222632-32222664)
chr7 (26-58)||(38198628-38198660)
chr7 (26-58)||(40348554-40348586)
[»] chr6 (16 HSPs)
chr6 (133-178)||(16510673-16510718)
chr6 (71-186)||(15132894-15133010)
chr6 (79-184)||(20702178-20702282)
chr6 (25-58)||(995645-995678)
chr6 (25-58)||(2141650-2141683)
chr6 (25-58)||(2397852-2397885)
chr6 (25-58)||(2656623-2656656)
chr6 (25-58)||(4890079-4890112)
chr6 (25-58)||(6142460-6142493)
chr6 (25-58)||(24798499-24798532)
chr6 (25-58)||(24825247-24825280)
chr6 (25-58)||(29514979-29515012)
chr6 (25-58)||(30699343-30699376)
chr6 (25-58)||(32541430-32541463)
chr6 (26-58)||(17417668-17417700)
chr6 (26-58)||(24693220-24693252)
[»] scaffold0500 (1 HSPs)
scaffold0500 (25-58)||(624-657)
[»] scaffold0221 (1 HSPs)
scaffold0221 (25-58)||(5458-5491)
[»] scaffold0063 (1 HSPs)
scaffold0063 (113-162)||(57827-57876)
[»] scaffold0001 (1 HSPs)
scaffold0001 (25-58)||(184048-184081)
[»] scaffold0687 (1 HSPs)
scaffold0687 (26-58)||(1071-1103)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 17104954 - 17105131
Alignment:
Q  20 ccaatgacatctcatatgatattatttatctttgtatatgtggtattctatactcgtttttggtgtcagaacgatttgcggacgggagccacctaagggg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17104954 ccaatgacatctcatatgatattatttatctttgtatatgtggtattctatactcgtttttggtgtcagaacgatttgcggacgggagccacctaagggg 17105053  T
Q  120 gtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacacaggt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17105054 gtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacacaggt 17105131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 37771126 - 37771016
Alignment:
Q  77 ttttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttg-gggtgatttcctttgg 175  Q
    |||||||||||||||  |||| |||| | ||| |  | || ||||||  ||||||||||||||||||||||| |||||||||| ||||||||||  ||||    
T  37771126 ttttggtgtcagaacagtttgtggactgaagctattttagagggtggttggtgttgtttaggtgaggaggcgggtgtttgttgagggtgatttctgttgg 37771027  T
Q  176 aggcagcctct 186  Q
    |||| ||||||    
T  37771026 aggctgcctct 37771016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 25762314 - 25762276
Alignment:
Q  20 ccaatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  25762314 ccaatgacatcttatatgatattatttatctttgtatat 25762276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 25766564 - 25766526
Alignment:
Q  20 ccaatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  25766564 ccaatgacatcttatatgatattatttatctttgtatat 25766526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 37987881 - 37987917
Alignment:
Q  22 aatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||| ||||||||||||||||||||||||||    
T  37987881 aatgacatcttatatgatattatttatctttgtatat 37987917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 12209109 - 12209071
Alignment:
Q  20 ccaatgacatctcatatgatattatttatctttgtatat 58  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  12209109 ccaacgacatcttatatgatattatttatctttgtatat 12209071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 41087208 - 41087158
Alignment:
Q  138 gtgaggaggcgtgtgtttgttgggg-tgatttcctttggaggcagcctctg 187  Q
    ||||||||||| ||||||||||||| ||||||| ||||||| |||||||||    
T  41087208 gtgaggaggcgggtgtttgttgggggtgatttcttttggagtcagcctctg 41087158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 4137524 - 4137491
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  4137524 gacatcttatatgatattatttatctttgtatat 4137491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 7724559 - 7724592
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  7724559 gacatcttatatgatattatttatctttgtatat 7724592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 8373549 - 8373516
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  8373549 gacatcttatatgatattatttatctttgtatat 8373516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 10333526 - 10333559
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  10333526 gacatcttatatgatattatttatctttgtatat 10333559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 15177484 - 15177451
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  15177484 gacatcttatatgatattatttatctttgtatat 15177451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 16126030 - 16126063
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  16126030 gacatcttatatgatattatttatctttgtatat 16126063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 16127728 - 16127761
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  16127728 gacatcttatatgatattatttatctttgtatat 16127761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 16333595 - 16333562
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  16333595 gacatcttatatgatattatttatctttgtatat 16333562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 38963910 - 38963877
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  38963910 gacatcttatatgatattatttatctttgtatat 38963877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 40471851 - 40471818
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  40471851 gacatcttatatgatattatttatctttgtatat 40471818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 41319872 - 41319905
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  41319872 gacatcttatatgatattatttatctttgtatat 41319905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 41436947 - 41436914
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  41436947 gacatcttatatgatattatttatctttgtatat 41436914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 45036478 - 45036445
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  45036478 gacatcttatatgatattatttatctttgtatat 45036445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 5030398 - 5030366
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  5030398 acatcttatatgatattatttatctttgtatat 5030366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 15821850 - 15821751
Alignment:
Q  88 gaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttc-ctttggaggcagcctct 186  Q
    ||||| ||||||||||||||| |  |||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  15821850 gaacggtttgcggacgggagctatataagggagtggctgatgttgtttaggtgaggaggcgggtgtttgttggggtgatttctttttggaggcagcctct 15821751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 36630493 - 36630553
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacac 193  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||| ||| |||||| |||||    
T  36630493 tttatgtgaggaggcgggtgcttgttggggtgatttcctttggaagcaacctctgttacac 36630553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 8058967 - 8059003
Alignment:
Q  22 aatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8058967 aatgacatcttatatgatattatttatctttgtatat 8059003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 10248984 - 10248932
Alignment:
Q  126 ggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggagg 178  Q
    ||||||||||||||||||||| | ||||||| |||||||||||| | ||||||    
T  10248984 ggtgttgtttaggtgaggaggagggtgtttgctggggtgatttcttctggagg 10248932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 25009262 - 25009226
Alignment:
Q  22 aatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||| ||||||||||||||||||||||||||    
T  25009262 aatgacatcttatatgatattatttatctttgtatat 25009226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 34389403 - 34389343
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacac 193  Q
    |||| ||||||||||| ||| |||||||||||||||||||| || ||| |||||| |||||    
T  34389403 tttaagtgaggaggcgggtgcttgttggggtgatttcctttagaagcaacctctgttacac 34389343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 32066720 - 32066661
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctaca 192  Q
    |||| ||||||||| | |||||||||||||||||||||||| || ||| |||||| ||||    
T  32066720 tttaagtgaggaggtgggtgtttgttggggtgatttcctttagaagcaacctctgttaca 32066661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 17657446 - 17657376
Alignment:
Q  118 gggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttgg-ggtgatttcctttggaggcagcctctg 187  Q
    ||||||| | |||||||||||||||||||||  |||| ||||| ||||||||  ||||||||| |||||||    
T  17657446 gggtggctgatgttgtttaggtgaggaggcggatgttcgttggaggtgatttgttttggaggctgcctctg 17657376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 25118906 - 25118868
Alignment:
Q  20 ccaatgacatctcatatgatattatttatctttgtatat 58  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  25118906 ccaacgacatcttatatgatattatttatctttgtatat 25118868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 3466398 - 3466365
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  3466398 gacatcttatatgatattatttatctttgtatat 3466365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 4327065 - 4327098
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  4327065 gacatcttatatgatattatttatctttgtatat 4327098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 5777500 - 5777533
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  5777500 gacatcttatatgatattatttatctttgtatat 5777533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 8123753 - 8123720
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  8123753 gacatcttatatgatattatttatctttgtatat 8123720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 13888576 - 13888609
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  13888576 gacatcttatatgatattatttatctttgtatat 13888609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 21133017 - 21133050
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  21133017 gacatcttatatgatattatttatctttgtatat 21133050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 23437759 - 23437792
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  23437759 gacatcttatatgatattatttatctttgtatat 23437792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 25691543 - 25691576
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  25691543 gacatcttatatgatattatttatctttgtatat 25691576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 27301977 - 27301944
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  27301977 gacatcttatatgatattatttatctttgtatat 27301944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 29616272 - 29616305
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  29616272 gacatcttatatgatattatttatctttgtatat 29616305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 30464547 - 30464514
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  30464547 gacatcttatatgatattatttatctttgtatat 30464514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 30653475 - 30653442
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  30653475 gacatcttatatgatattatttatctttgtatat 30653442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 38842278 - 38842245
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  38842278 gacatcttatatgatattatttatctttgtatat 38842245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 44039940 - 44039907
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  44039940 gacatcttatatgatattatttatctttgtatat 44039907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 44871446 - 44871413
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  44871446 gacatcttatatgatattatttatctttgtatat 44871413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 44887661 - 44887694
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  44887661 gacatcttatatgatattatttatctttgtatat 44887694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 7431266 - 7431298
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  7431266 acatcttatatgatattatttatctttgtatat 7431298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 7603421 - 7603389
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  7603421 acatcttatatgatattatttatctttgtatat 7603389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 37987284 - 37987244
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttccttt 173  Q
    |||| |||| |||||| ||||||||||||||||||||||||    
T  37987284 tttaagtgaagaggcgggtgtttgttggggtgatttccttt 37987244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 42786045 - 42786077
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  42786045 acatcttatatgatattatttatctttgtatat 42786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 16147169 - 16147284
Alignment:
Q  78 tttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggag 177  Q
    |||||||||| || |||||||| ||| |||| |  ||||  |||||  ||||||||||||||||||||| | |||||  |||||||||||||||||||||    
T  16147169 tttggtgtcataatgatttgcgtacgagagctatataagatggtggttggtgttgtttaggtgaggaggtgggtgttgcttggggtgatttcctttggag 16147268  T
Q  178 gcagcctctgctacac 193  Q
    |||||||||| |||||    
T  16147269 gcagcctctgttacac 16147284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 52278098 - 52278212
Alignment:
Q  71 actcgtttttggtgtcagaac-gatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttc 169  Q
    |||||||||  |||||||||| | ||||||||| ||||| |  ||| ||||| ||  |||||||||||||||||||||  |||||||||||||||||||     
T  52278098 actcgttttctgtgtcagaacagttttgcggacaggagctaattaaaggggtagctagtgttgtttaggtgaggaggcaggtgtttgttggggtgatttt 52278197  T
Q  170 ctttggaggcagcct 184  Q
    ||||||||| |||||    
T  52278198 ctttggaggaagcct 52278212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 24658524 - 24658637
Alignment:
Q  74 cgtttttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttccttt 173  Q
    ||||||||||||| || |  ||||| ||||||||   |||||||||||||| ||||| ||||||||||||||  |  || ||||||||||| ||||||||    
T  24658524 cgtttttggtgtcggatcagtttgcagacgggagattcctaagggggtggcaggtgtcgtttaggtgaggagatggatgcttgttggggtgttttccttt 24658623  T
Q  174 ggaggcagcctctg 187  Q
    |||| || ||||||    
T  24658624 ggagccaacctctg 24658637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 24450357 - 24450317
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttccttt 173  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  24450357 tttaagtgaggaggcgtgtgcttgttggggtgatttccttt 24450317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 46693244 - 46693184
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacac 193  Q
    |||| ||||||||| | |||||||||||||||||||||||| || ||| |||||| |||||    
T  46693244 tttaagtgaggaggtgggtgtttgttggggtgatttcctttagaagcaacctctgttacac 46693184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 20113946 - 20113880
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacacaggttc 199  Q
    |||| ||||||||||| ||| |||||||||||||||||||| || ||| ||| || ||||| |||||    
T  20113946 tttaagtgaggaggcgagtgcttgttggggtgatttcctttagaagcaacctatgttacacgggttc 20113880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 1821581 - 1821614
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  1821581 gacatcttatatgatattatttatctttgtatat 1821614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 2138982 - 2139015
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  2138982 gacatcttatatgatattatttatctttgtatat 2139015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 5606344 - 5606377
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  5606344 gacatcttatatgatattatttatctttgtatat 5606377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 5945880 - 5945847
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  5945880 gacatcttatatgatattatttatctttgtatat 5945847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 6017402 - 6017435
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  6017402 gacatcttatatgatattatttatctttgtatat 6017435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 7075283 - 7075316
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  7075283 gacatcttatatgatattatttatctttgtatat 7075316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 10100466 - 10100499
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  10100466 gacatcttatatgatattatttatctttgtatat 10100499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 10648151 - 10648184
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  10648151 gacatcttatatgatattatttatctttgtatat 10648184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 31651854 - 31651887
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  31651854 gacatcttatatgatattatttatctttgtatat 31651887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 40058920 - 40058953
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  40058920 gacatcttatatgatattatttatctttgtatat 40058953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 43453118 - 43453151
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  43453118 gacatcttatatgatattatttatctttgtatat 43453151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 44741458 - 44741425
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  44741458 gacatcttatatgatattatttatctttgtatat 44741425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 45299433 - 45299400
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  45299433 gacatcttatatgatattatttatctttgtatat 45299400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 49903638 - 49903671
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  49903638 gacatcttatatgatattatttatctttgtatat 49903671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 52688646 - 52688613
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  52688646 gacatcttatatgatattatttatctttgtatat 52688613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 52749396 - 52749363
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  52749396 gacatcttatatgatattatttatctttgtatat 52749363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 30686317 - 30686269
Alignment:
Q  145 ggcgtgtgtttgttggggtgatttcctttggaggcagcctctgctacac 193  Q
    |||||||| |||||||||||||||||||| || ||||| |||| |||||    
T  30686317 ggcgtgtgcttgttggggtgatttcctttagaagcagcatctgttacac 30686269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 32968227 - 32968195
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  32968227 acatcttatatgatattatttatctttgtatat 32968195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 38786900 - 38786932
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  38786900 acatcttatatgatattatttatctttgtatat 38786932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 47912399 - 47912363
Alignment:
Q  22 aatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  47912399 aatgacgtcttatatgatattatttatctttgtatat 47912363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 50295890 - 50295922
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  50295890 acatcttatatgatattatttatctttgtatat 50295922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 51924924 - 51924956
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  51924924 acatcttatatgatattatttatctttgtatat 51924956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 19672742 - 19672810
Alignment:
Q  117 ggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctc 185  Q
    |||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  19672742 ggggtgactggtgttgtttaggtgaggaggcgggtgtttgtttgggtgatttcctttggaggcatcctc 19672810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 38639892 - 38639799
Alignment:
Q  77 ttttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttgg-ggtgatttc 169  Q
    |||||||||||||||| |||| ||||| ||||    |||||||||||  ||||||||||||||||||||| |  |||||||||| |||||||||    
T  38639892 ttttggtgtcagaacggtttgtggacgagagctttataagggggtggttggtgttgtttaggtgaggaggtggatgtttgttggaggtgatttc 38639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 18881302 - 18881338
Alignment:
Q  22 aatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||| ||||||||||||||||||||||||||    
T  18881302 aatgacatcttatatgatattatttatctttgtatat 18881338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 47834089 - 47834125
Alignment:
Q  22 aatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||| ||||||||||||||||||||||||||    
T  47834089 aatgacatcttatatgatattatttatctttgtatat 47834125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 31051069 - 31051026
Alignment:
Q  150 gtgtttgttggggtgatttcctttggaggcagcctctgctacac 193  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||    
T  31051069 gtgtttgtttgggtgttttcctttggaggcagcctctggtacac 31051026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 1613166 - 1613199
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  1613166 gacatcttatatgatattatttatctttgtatat 1613199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 1981329 - 1981362
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  1981329 gacatcttatatgatattatttatctttgtatat 1981362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 31152776 - 31152743
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  31152776 gacatcttatatgatattatttatctttgtatat 31152743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 37164131 - 37164098
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  37164131 gacatcttatatgatattatttatctttgtatat 37164098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 39260467 - 39260434
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  39260467 gacatcttatatgatattatttatctttgtatat 39260434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 40411556 - 40411589
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  40411556 gacatcttatatgatattatttatctttgtatat 40411589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 43047502 - 43047469
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  43047502 gacatcttatatgatattatttatctttgtatat 43047469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 43447280 - 43447247
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  43447280 gacatcttatatgatattatttatctttgtatat 43447247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 46608328 - 46608295
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  46608328 gacatcttatatgatattatttatctttgtatat 46608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 53987728 - 53987761
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  53987728 gacatcttatatgatattatttatctttgtatat 53987761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 55631823 - 55631856
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  55631823 gacatcttatatgatattatttatctttgtatat 55631856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 27976684 - 27976652
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  27976684 acatctaatatgatattatttatctttgtatat 27976652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 39195604 - 39195572
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  39195604 acatcttatatgatattatttatctttgtatat 39195572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 47235316 - 47235411
Alignment:
Q  78 tttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttccttt 173  Q
    |||||||||| |||| ||||||||||||||| |    || ||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||||||    
T  47235316 tttggtgtcaaaacggtttgcggacgggagcaataatagagggtggctggtgttgtttaagtgaggaggtgggtgttggttggggtgatttccttt 47235411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 4464383 - 4464327
Alignment:
Q  113 taagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttc 169  Q
    |||| ||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||    
T  4464383 taagagggtggctggtgttgtttaggtgagtaggcgggtgtttgatggggtgatttc 4464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 37123038 - 37123100
Alignment:
Q  126 ggtgttgtttaggtgaggaggcgtgtgtttgttg-gggtgatttcctttggaggcagcctctg 187  Q
    ||||||||||||||||||||||  |||||||||| |||||||||| || |||||| |||||||    
T  37123038 ggtgttgtttaggtgaggaggcaggtgtttgttgagggtgatttctttcggaggcggcctctg 37123100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 901032 - 901065
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  901032 gacatcttatatgatattatttatctttgtatat 901065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 9484711 - 9484678
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  9484711 gacatcttatatgatattatttatctttgtatat 9484678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 12948155 - 12948122
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  12948155 gacatcttatatgatattatttatctttgtatat 12948122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 14751005 - 14751038
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  14751005 gacatcttatatgatattatttatctttgtatat 14751038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 16434801 - 16434834
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  16434801 gacatcttatatgatattatttatctttgtatat 16434834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 18013414 - 18013447
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  18013414 gacatcttatatgatattatttatctttgtatat 18013447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 29455652 - 29455685
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  29455652 gacatcttatatgatattatttatctttgtatat 29455685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 29793322 - 29793355
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  29793322 gacatcttatatgatattatttatctttgtatat 29793355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 34263648 - 34263681
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  34263648 gacatcttatatgatattatttatctttgtatat 34263681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 34555266 - 34555233
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  34555266 gacatcttatatgatattatttatctttgtatat 34555233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 34669723 - 34669690
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  34669723 gacatcttatatgatattatttatctttgtatat 34669690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 36179080 - 36179113
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  36179080 gacatcttatatgatattatttatctttgtatat 36179113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 42098571 - 42098604
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  42098571 gacatcttatatgatattatttatctttgtatat 42098604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 44821473 - 44821506
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||||||||||| ||||||||||||||||||    
T  44821473 gacatctcatatgatgttatttatctttgtatat 44821506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 48927746 - 48927779
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  48927746 gacatcttatatgatattatttatctttgtatat 48927779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 49076370 - 49076403
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  49076370 gacatcttatatgatattatttatctttgtatat 49076403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 50673792 - 50673759
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  50673792 gacatcttatatgatattatttatctttgtatat 50673759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 52094038 - 52094071
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  52094038 gacatcttatatgatattatttatctttgtatat 52094071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 8437227 - 8437195
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  8437227 acatcttatatgatattatttatctttgtatat 8437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 8440581 - 8440549
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  8440581 acatcttatatgatattatttatctttgtatat 8440549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 35322346 - 35322378
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  35322346 acatcttatatgatattatttatctttgtatat 35322378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 39099077 - 39099045
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  39099077 acatctaatatgatattatttatctttgtatat 39099045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 45163504 - 45163544
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttccttt 173  Q
    |||| ||||||||||| |||| |||||||||||||||||||    
T  45163504 tttaagtgaggaggcgggtgtatgttggggtgatttccttt 45163544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 46866457 - 46866425
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  46866457 acatcttatatgatattatttatctttgtatat 46866425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 47638202 - 47638230
Alignment:
Q  26 acatctcatatgatattatttatctttgt 54  Q
    |||||||||||||||||||||||||||||    
T  47638202 acatctcatatgatattatttatctttgt 47638230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 48690200 - 48690232
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  48690200 acatcttatatgatattatttatctttgtatat 48690232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 53274940 - 53274972
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  53274940 acatcttatatgatattatttatctttgtatat 53274972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 26046409 - 26046335
Alignment:
Q  114 aagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttgggg-tgatttcctttggaggcagcctctg 187  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||| | |||||||    
T  26046409 aagggggtggctggtgttgtttaggtgagtaggcgggtgtttgttggggttgatttcttttggagactgcctctg 26046335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 13954713 - 13954612
Alignment:
Q  78 tttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgtt-ggggtgatttcctttgga 176  Q
    ||||||||| ||||| |||| |||||||||| |  | | ||||||||  ||||||||||||||||||| || ||||||||| ||||||||||||| ||||    
T  13954713 tttggtgtcggaacggtttgtggacgggagctatattacggggtggctagtgttgtttaggtgaggagacgggtgtttgttgggggtgatttcctctgga 13954614  T
Q  177 gg 178  Q
    ||    
T  13954613 gg 13954612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 8297076 - 8297158
Alignment:
Q  79 ttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggg 161  Q
    |||||||||||| | |||||| | |||||| |  ||||||||||||  ||||||||||||||| |||| |  |||||||||||    
T  8297076 ttggtgtcagaatggtttgcgaaagggagctatataagggggtggctagtgttgtttaggtgaagaggtgaatgtttgttggg 8297158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 1098290 - 1098257
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  1098290 gacatcttatatgatattatttatctttgtatat 1098257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 1781094 - 1781127
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  1781094 gacatcttatatgatattatttatctttgtatat 1781127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 9936837 - 9936870
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  9936837 gacatcttatatgatattatttatctttgtatat 9936870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 13548328 - 13548295
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  13548328 gacatcttatatgatattatttatctttgtatat 13548295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 14057823 - 14057790
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  14057823 gacatcttatatgatattatttatctttgtatat 14057790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 19344648 - 19344681
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  19344648 gacatcttatatgatattatttatctttgtatat 19344681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 20022975 - 20022942
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  20022975 gacatcttatatgatattatttatctttgtatat 20022942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 20040364 - 20040397
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  20040364 gacatcttatatgatattatttatctttgtatat 20040397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 20502997 - 20503030
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  20502997 gacatcttatatgatattatttatctttgtatat 20503030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 27674332 - 27674299
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  27674332 gacatcttatatgatattatttatctttgtatat 27674299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 30211690 - 30211723
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  30211690 gacatcttatatgatattatttatctttgtatat 30211723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 30721634 - 30721667
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  30721634 gacatcttatatgatattatttatctttgtatat 30721667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 31191126 - 31191159
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  31191126 gacatcttatatgatattatttatctttgtatat 31191159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 39925319 - 39925286
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  39925319 gacatcttatatgatattatttatctttgtatat 39925286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 40316933 - 40316900
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  40316933 gacatcttatatgatattatttatctttgtatat 40316900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 41263078 - 41263111
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  41263078 gacatcttatatgatattatttatctttgtatat 41263111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 41410608 - 41410641
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  41410608 gacatcttatatgatattatttatctttgtatat 41410641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 1918779 - 1918811
Alignment:
Q  25 gacatctcatatgatattatttatctttgtata 57  Q
    ||||||| |||||||||||||||||||||||||    
T  1918779 gacatcttatatgatattatttatctttgtata 1918811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 14633121 - 14633089
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  14633121 acatcttatatgatattatttatctttgtatat 14633089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 28143042 - 28143010
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  28143042 acatcttatatgatattatttatctttgtatat 28143010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 39035678 - 39035642
Alignment:
Q  22 aatgacatctcatatgatattatttatctttgtatat 58  Q
    |||||||||| |||| |||||||||||||||||||||    
T  39035678 aatgacatcttatattatattatttatctttgtatat 39035642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 3477969 - 3478060
Alignment:
Q  94 tttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctc 185  Q
    ||||| ||||||||| |  ||| |||||||| |||||||||||||||||| || | |||||| ||||||||||||  |||||||||| ||||    
T  3477969 tttgcagacgggagctatttaatggggtggctggtgttgtttaggtgaggtggggggtgttttttggggtgattttatttggaggcatcctc 3478060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 6584700 - 6584770
Alignment:
Q  116 gggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttcctttggaggcagcctct 186  Q
    ||||||||  |||||| |||||||||||||||  |||||||||||||||||||| |||||||  |||||||    
T  6584700 gggggtggttggtgttatttaggtgaggaggcaggtgtttgttggggtgatttcttttggagatagcctct 6584770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 16954291 - 16954358
Alignment:
Q  115 agggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgtt-ggggtgatttcctttggaggcag 181  Q
    ||||| ||| |||||||||||| ||||||||| | ||||||||| ||||||||||| | |||||||||    
T  16954291 aggggttggtgggtgttgtttatgtgaggaggagagtgtttgttgggggtgatttcgtctggaggcag 16954358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 25160477 - 25160511
Alignment:
Q  138 gtgaggaggcgtgtgtttgttggggtgatttcctt 172  Q
    ||||||||||| |||||||||||||||||||||||    
T  25160477 gtgaggaggcgggtgtttgttggggtgatttcctt 25160511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 4088785 - 4088818
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  4088785 gacatcttatatgatattatttatctttgtatat 4088818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 9173285 - 9173318
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  9173285 gacatcttatatgatattatttatctttgtatat 9173318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 16807095 - 16807128
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  16807095 gacatcttatatgatattatttatctttgtatat 16807128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 26651158 - 26651191
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  26651158 gacatcttatatgatattatttatctttgtatat 26651191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 29247742 - 29247709
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  29247742 gacatcttatatgatattatttatctttgtatat 29247709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 30462170 - 30462203
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  30462170 gacatcttatatgatattatttatctttgtatat 30462203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 31496594 - 31496627
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  31496594 gacatcttatatgatattatttatctttgtatat 31496627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 35265770 - 35265803
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  35265770 gacatcttatatgatattatttatctttgtatat 35265803  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 38069166 - 38069133
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  38069166 gacatcttatatgatattatttatctttgtatat 38069133  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 38353547 - 38353580
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  38353547 gacatcttatatgatattatttatctttgtatat 38353580  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 38850817 - 38850784
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  38850817 gacatcttatatgatattatttatctttgtatat 38850784  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 48448633 - 48448600
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  48448633 gacatcttatatgatattatttatctttgtatat 48448600  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 28016229 - 28016197
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  28016229 acatcttatatgatattatttatctttgtatat 28016197  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 32222664 - 32222632
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  32222664 acatcttatatgatattatttatctttgtatat 32222632  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 38198628 - 38198660
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  38198628 acatcttatatgatattatttatctttgtatat 38198660  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 40348554 - 40348586
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  40348554 acatcttatatgatattatttatctttgtatat 40348586  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 16510718 - 16510673
Alignment:
Q  133 tttaggtgaggaggcgtgtgtttgttggggtgatttcctttggagg 178  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  16510718 tttaagtgaggaggcgggtgtttgttggggtgatttcctttggagg 16510673  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 15133010 - 15132894
Alignment:
Q  71 actcgtttttggtgtcagaacgattt-gcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttggggtgatttc 169  Q
    ||||| |||||||||||||||| ||| ||||||||||||    ||||| |||||  ||||  ||||||||||| ||| | ||||||||||||| |||||     
T  15133010 actcggttttggtgtcagaacggttttgcggacgggagctttttaaggaggtggttggtgcagtttaggtgagcaggtgggtgtttgttggggagatttt 15132911  T
Q  170 ctttggaggcagcctct 186  Q
    |||| ||| ||||||||    
T  15132910 ctttagagacagcctct 15132894  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 20702282 - 20702178
Alignment:
Q  79 ttggtgtcagaacgatttgcggacgggagccacctaagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgtt-ggggtgatttcctttggag 177  Q
    |||||||| ||||||||||||||||| |||    ||||||| |||  || |||| ||| ||||||||||| ||||||||| ||||||||||| |||||||    
T  20702282 ttggtgtcggaacgatttgcggacgg-agctttgtaaggggttggatgg-gttgcttatgtgaggaggcgggtgtttgttgggggtgatttcttttggag 20702185  T
Q  178 gcagcct 184  Q
    | |||||    
T  20702184 gtagcct 20702178  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 995678 - 995645
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  995678 gacatcttatatgatattatttatctttgtatat 995645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 2141683 - 2141650
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  2141683 gacatcttatatgatattatttatctttgtatat 2141650  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 2397885 - 2397852
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  2397885 gacatcttatatgatattatttatctttgtatat 2397852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 2656623 - 2656656
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  2656623 gacatcttatatgatattatttatctttgtatat 2656656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 4890079 - 4890112
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  4890079 gacatcttatatgatattatttatctttgtatat 4890112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 6142460 - 6142493
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  6142460 gacatcttatatgatattatttatctttgtatat 6142493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 24798499 - 24798532
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  24798499 gacatcttatatgatattatttatctttgtatat 24798532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 24825280 - 24825247
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  24825280 gacatcttatatgatattatttatctttgtatat 24825247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 29514979 - 29515012
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  29514979 gacatcttatatgatattatttatctttgtatat 29515012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 30699376 - 30699343
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  30699376 gacatcttatatgatattatttatctttgtatat 30699343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 32541430 - 32541463
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  32541430 gacatcttatatgatattatttatctttgtatat 32541463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 17417668 - 17417700
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  17417668 acatcttatatgatattatttatctttgtatat 17417700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 24693252 - 24693220
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  24693252 acatcttatatgatattatttatctttgtatat 24693220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 624 - 657
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  624 gacatcttatatgatattatttatctttgtatat 657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 5491 - 5458
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  5491 gacatcttatatgatattatttatctttgtatat 5458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 57827 - 57876
Alignment:
Q  113 taagggggtggcgggtgttgtttaggtgaggaggcgtgtgtttgttgggg 162  Q
    ||||||||||||  ||||| |||||||||||||| | |||||||||||||    
T  57827 taagggggtggcttgtgttatttaggtgaggaggtgggtgtttgttgggg 57876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 184081 - 184048
Alignment:
Q  25 gacatctcatatgatattatttatctttgtatat 58  Q
    ||||||| ||||||||||||||||||||||||||    
T  184081 gacatcttatatgatattatttatctttgtatat 184048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 1103 - 1071
Alignment:
Q  26 acatctcatatgatattatttatctttgtatat 58  Q
    |||||| ||||||||||||||||||||||||||    
T  1103 acatcttatatgatattatttatctttgtatat 1071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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