View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1903_low_5 (Length: 443)

Name: NF1903_low_5
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1903_low_5
NF1903_low_5
[»] chr3 (1 HSPs)
chr3 (10-443)||(52828642-52829074)


Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 52828642 - 52829074
Alignment:
Q  10 catcatcaatctttgctaatttatgcaaataaagaatcatactagtctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828642 catcatcaatctttgctaatttatgcaaataaagaatcatactaatctcactgtgggggtacagtcgacaaataaagaaatgctacaaactccatagtga 52828741  T
Q  110 aatggtggttaatataaacttcaaaaaagaacaataatatgaacattttccatctgaataagaaagttggagatctttagcttctagaccgttaaacttc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52828742 aatggtggttaatataaacttcaaaaaagaacaataatatgaacattttccatctgaata-gaaagttggagatctttagcttctagaccgttaaacttc 52828840  T
Q  210 aagcaaccctatgtctaatatatagggtaccaattaatcaaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgaga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828841 aagcaaccctatgtctaatatatagggtaccaattaatcaaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgaga 52828940  T
Q  310 cattatagttttatcattctattgaaaatagtcactacaaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52828941 cattatagttttatcattctattgaaaatagtcactacaaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtac 52829040  T
Q  410 ggctaatcacctattaacctaaacagttcatatt 443  Q
    ||||||||||||||||||||||||||||||||||    
T  52829041 ggctaatcacctattaacctaaacagttcatatt 52829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University