View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_low_6 (Length: 407)
Name: NF1903_low_6
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 23341823 - 23341428
Alignment:
| Q |
1 |
catgattgttgttcctcgattggcctatcaatatttccttttaagcaaggaaatattaccatctaggcttaataattattgttgctattatcaacctaga |
100 |
Q |
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| T |
23341823 |
catgattgttgttcctcgattggcctatcaatatttccttttaagcaaggaaatattaccatctaggcttaataattattgttgctattatcaacctaga |
23341724 |
T |
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| Q |
101 |
aaattcggtatagaaggtattgctcacaatcaaattttcatgaccaatgaacgcatatatgattggggagatttctgtgaactgtatcctgaatcaccta |
200 |
Q |
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| T |
23341723 |
aaattcgatatagaaggtattgctcacaatcaaattttcatgaccaatgaacgcatatatgattggggagatttctgtgaactgtatcctgaatcaccta |
23341624 |
T |
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| Q |
201 |
aagtaagttaccaaggttatgttaagggaccgagaatttacgtggccacagatgacctggtcatttcacctttgtctccaatcacccttttagatttact |
300 |
Q |
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| T |
23341623 |
aagtaagttaccaaggttatgttaagggaccgagaatttacgtggccacagatgacctggtcatttcacctttgtctccaatcacccttttagatttact |
23341524 |
T |
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| Q |
301 |
caactgttttgaaacttctgttggtgatctgaaggaaaaggttgtcactattggcatcaaagaggtgataaaccctaaagatatattatctcctat |
396 |
Q |
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| T |
23341523 |
caaccgttttaaaacttctgttggtgatctgaaggaaaaggttgtcactattggcatcaaagaggtgataaaccctaaagatatattatctcctat |
23341428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 23335010 - 23334947
Alignment:
| Q |
300 |
tcaactgttttgaaacttctgttggtgatctgaaggaaaaggttgtcactattggcatcaaaga |
363 |
Q |
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| T |
23335010 |
tcaaccgttttgaaactccttttgaagatctgaaggaaaagggtgtcaccattggcaccaaaga |
23334947 |
T |
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