View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1903_low_7 (Length: 391)
Name: NF1903_low_7
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 29981615 - 29981979
Alignment:
| Q |
19 |
cattcattacgcgaaacgagtgtcctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtg |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981615 |
cattcattacgcgaaacgagtgccctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtg |
29981714 |
T |
|
| Q |
119 |
tgcacttgaacaaatgtattcatgaatgttgttgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgca |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981715 |
tgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgca |
29981814 |
T |
|
| Q |
219 |
attaccatttggtctttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctg |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29981815 |
attaccatttggtctttgttgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctg |
29981914 |
T |
|
| Q |
319 |
agagttccattaagtgcattgcgtatatacataactttcctcgctttcgtgttcctcatgatgat |
383 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29981915 |
agagttccattaagtgcattgcatatatacataactttcctcgctttcgtgttcctcttgatgat |
29981979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 150 - 371
Target Start/End: Complemental strand, 8156283 - 8156063
Alignment:
| Q |
150 |
ttgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgtt |
249 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8156283 |
ttgagagatgaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgtt |
8156184 |
T |
|
| Q |
250 |
ttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcgtatataca |
349 |
Q |
| |
|
||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8156183 |
ttttgttcc-aaagggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatataca |
8156085 |
T |
|
| Q |
350 |
taactttcctcgctttcgtgtt |
371 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
8156084 |
taactttgctcgctttcgtgtt |
8156063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 51405083 - 51404730
Alignment:
| Q |
19 |
cattcattacgcgaaacgagtgtcctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtg |
118 |
Q |
| |
|
|||||||||| |||| || ||||||||||| ||||| |||||||| | || |||||||| || || ||||| || || |||| | |||||||| || |
|
|
| T |
51405083 |
cattcattacatgaaatgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatcgaggcacgcttttgatg |
51404984 |
T |
|
| Q |
119 |
tgcacttgaacaaatgtattcatgaatgttgttgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgca |
218 |
Q |
| |
|
||||| | |||||| | |||||| |||||| |||||| ||||| |||||||| ||||||||||||||| | || | |||||| | ||| || || |
|
|
| T |
51404983 |
agcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcg |
51404884 |
T |
|
| Q |
219 |
attaccatttggtctttgctgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctg |
318 |
Q |
| |
|
|| |||||||| |||| |||| |||||||||||||||||| |||| ||||| || | ||| || |||||||| | || ||||||| |||||||| |
|
|
| T |
51404883 |
ataaccatttgatcttca---tcattttgttttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctg |
51404787 |
T |
|
| Q |
319 |
agagttccattaagtgcattgcgtatatacataactttcctcgctttcgtgttcctc |
375 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| | ||||||||||||| ||||||| |
|
|
| T |
51404786 |
agagttccatcaagtgcattgcatagatacagagtcttcctcgctttcgggttcctc |
51404730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 150 - 383
Target Start/End: Complemental strand, 7675005 - 7674772
Alignment:
| Q |
150 |
ttgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgtt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7675005 |
ttgagagatgaaattgttgtcataggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgtt |
7674906 |
T |
|
| Q |
250 |
ttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcgtatataca |
349 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
7674905 |
ttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattgcatatataca |
7674806 |
T |
|
| Q |
350 |
taactttcctcgctttcgtgttcctcatgatgat |
383 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
7674805 |
caactttcctcgctttcgtgttcctcttgatgat |
7674772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 150 - 383
Target Start/End: Original strand, 36613440 - 36613673
Alignment:
| Q |
150 |
ttgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgtt |
249 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36613440 |
ttgagagatgaaattgttgtcacaggacgaacattgacactacttaaatgtccataagcttcaaatgcaattaccatttggtctttgttgtcatgttgtt |
36613539 |
T |
|
| Q |
250 |
ttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcgtatataca |
349 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36613540 |
ttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcatatataca |
36613639 |
T |
|
| Q |
350 |
taactttcctcgctttcgtgttcctcatgatgat |
383 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
36613640 |
caactttcctcgctttcgtgttcctcttgatgat |
36613673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 150 - 383
Target Start/End: Original strand, 25523663 - 25523896
Alignment:
| Q |
150 |
ttgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgctgtcatgttgtt |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25523663 |
ttgagagatgaaattgttgtcataggacgaacaatgacactacttaaatgtccataagcttcaaatgcaattaccatttggtcttttttgtcatgttgtt |
25523762 |
T |
|
| Q |
250 |
ttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattgcgtatataca |
349 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
25523763 |
ttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattgcatatataca |
25523862 |
T |
|
| Q |
350 |
taactttcctcgctttcgtgttcctcatgatgat |
383 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |
|
|
| T |
25523863 |
caactttccttgctttcgtgttcctcttgatgat |
25523896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University