View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1903_low_9 (Length: 371)
Name: NF1903_low_9
Description: NF1903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1903_low_9 |
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| [»] scaffold0094 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 31242346 - 31241991
Alignment:
| Q |
1 |
agaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagatatgnnnnnnn--ggtatttcaattaatattctca |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
31242346 |
agaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgcctaagatatgtttttttttggtatttcaattaatattctca |
31242247 |
T |
|
| Q |
99 |
caactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242246 |
caactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaatacagtgagtaattatgc |
31242147 |
T |
|
| Q |
199 |
aatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcatctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242146 |
aatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaatcttagaatgcatctt |
31242047 |
T |
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| Q |
299 |
tgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242046 |
tgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc |
31241991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 83 - 354
Target Start/End: Original strand, 10897 - 11174
Alignment:
| Q |
83 |
tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata |
182 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |
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| T |
10897 |
tcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttctacctcatcttaatcagcaaaaatcaacg |
10996 |
T |
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| Q |
183 |
cagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaa |
282 |
Q |
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||| |||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
10997 |
tagtaagtaattatgcaattatattctttctattctcccttgacattaacttttccaatccttgatagaatcgtgaactttaattctctcgtgttcttaa |
11096 |
T |
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| Q |
283 |
tctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc |
354 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| |
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| T |
11097 |
tctttacttaagaatgcatctttgttctcaatcatagtgtctaacacgcccattgcaagtaatcttacatcttgatgc |
11174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 8908 - 8785
Alignment:
| Q |
237 |
ccaatccttgatagaatcatgaactttaattatctcgtgttcttaatctta------gaatgcatctttgttctcgatcatagtgtctaacacacccatt |
330 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8908 |
ccaatccttgatagaatcgtgaactttaattatcttgtgttcttaatctttacttaggaatgcatctttgttctcgatcatagtgtctaacacgcccatt |
8809 |
T |
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| Q |
331 |
gcaactaatcttacgccttgatgc |
354 |
Q |
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|||||||||||||| |||||||| |
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| T |
8808 |
gcaactaatcttacatcttgatgc |
8785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 8981 - 8913
Alignment:
| Q |
85 |
aattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttc |
153 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8981 |
aattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcccaacaagatcttc |
8913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10807 - 10864
Alignment:
| Q |
1 |
agaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatg |
58 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
10807 |
agaaattttgattgtttaaaacatgatatattctgataaagaaaagctatattgcatg |
10864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9073 - 9012
Alignment:
| Q |
1 |
agaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtcta |
62 |
Q |
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||||||||||||||||||||| ||||| |||| |||||||||||| | ||||||||| ||| |
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| T |
9073 |
agaaattttgattgtttaaaatatgatatattgtgataaagaaaagctatattgcatgccta |
9012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 83 - 354
Target Start/End: Complemental strand, 17214358 - 17214081
Alignment:
| Q |
83 |
tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata |
182 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
17214358 |
tcaattaatattctcacaactttgtttaattgcacaatgacaacaaccattgtcttcccaacaagatcttctacctcatcttaatcagcaagaatcaacg |
17214259 |
T |
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| Q |
183 |
cagtgagtaattatgcaatccttttctttccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttcttaa |
282 |
Q |
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|||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
17214258 |
cagtaagtaattattcaattgtattctttccattctcccttggcattaacttttccaatccttaatagaattgtgaactttaattatctcgtgttcttaa |
17214159 |
T |
|
| Q |
283 |
tctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttacgccttgatgc |
354 |
Q |
| |
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|||| |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
17214158 |
tctttacttaagaatgcatctttgttctcgataatattgtctaacacgcccattgcaactaatcttacatcttgatgc |
17214081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 83 - 344
Target Start/End: Original strand, 17216217 - 17216483
Alignment:
| Q |
83 |
tcaattaatattctcacaactttgtcttattgcacaatgacagcaaccattgtcttccgaacaagatcttctgcctcatcttaatcagcaggaatcaata |
182 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||| |
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| T |
17216217 |
tcaattaatattctcacaactttgtctaattgcacaatgacagcaaccattgtcttcc--acaagatcttctacctcgtcttaatcagcaaaaatcaatg |
17216314 |
T |
|
| Q |
183 |
cagtgagtaattatgcaatccttttcttt-ccattctcccttggcattaacttttccaatccttgatagaatcatgaactttaattatctcgtgttctta |
281 |
Q |
| |
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|||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
17216315 |
cagtaagtaattatgcaattatattcttttccattctcccttggcattaacttttccaatccttgatagaatcgtgaactttagttatctcgtgctctta |
17216414 |
T |
|
| Q |
282 |
atctt------agaatgcatctttgttctcgatcatagtgtctaacacacccattgcaactaatcttac |
344 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
17216415 |
atctttacttaagaatgcatctttgttctcgatcatagtgtctaacacgcccattgcaactaatcttac |
17216483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17216127 - 17216193
Alignment:
| Q |
1 |
agaaattttgattgtttaaaacatgatgtattctgataaagaaaatttgtattgcatgtctaagata |
67 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||||||| | ||||| ||||||| |||| |
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|
| T |
17216127 |
agaaattttgattgttcaaaacatgatatattctgataaagaaaagctatattgtatgtctatgata |
17216193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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