View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19040_high_2 (Length: 592)
Name: NF19040_high_2
Description: NF19040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19040_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 172 - 539
Target Start/End: Original strand, 41795516 - 41795885
Alignment:
| Q |
172 |
gtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatggt |
271 |
Q |
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| T |
41795516 |
gtgtgttaagtacagaagagttaaacaaaaaattcgaagatttcattagaaagatgaaagaagatctaagaattgatgctagacggcatttagtcatggt |
41795615 |
T |
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| Q |
272 |
ttgatttaagcaacaa--aaccatgatcttctttcttttgatcatgctattttagatgtatgcatccattaaattttgcaaagatttccccatattaaca |
369 |
Q |
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| T |
41795616 |
ttgatttaagtaaacagcaaccatgatcttctttcttttgatcatgctattttagatgtatgcatccattaaattttgcaaagatttccccatattaaca |
41795715 |
T |
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| Q |
370 |
aagagcaagtttacatgccaaatttcttttttaataagtaattgattgcattgctctaactattttttaccaaccaacttactctaagcatttgattaca |
469 |
Q |
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| T |
41795716 |
aagagcaagtttacatgccaaatttcttttttaataagtaattgattgcattgctctaactattttttaccaaccaacttactctaagcatttgattacg |
41795815 |
T |
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| Q |
470 |
taccgttgctatgttattggagtaaataataatgataatagtatgattaacaagatgccatgtatatgga |
539 |
Q |
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| T |
41795816 |
taccgttgctatgttattggagtaaataataatgataatagtatgattaacaagatgccatgtatatgga |
41795885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 170 - 400
Target Start/End: Original strand, 41760725 - 41760968
Alignment:
| Q |
170 |
ttgtgtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
269 |
Q |
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| T |
41760725 |
ttgtgtgctaagtacagaagagttaaacaaaaaatttgaagatttcattagaaagatgaaagaagatcttagaattgatgctagacggcatttaatcatg |
41760824 |
T |
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| Q |
270 |
gtttgatttaagcaacaaaa-ccatgatcttctttcttttgatcatgc------tatt-------ttagatgtatgcatccattaaattttgcaaagatt |
355 |
Q |
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| T |
41760825 |
gtttgatttaagcaacaaaacccatgatcttctttcttttgatcatgcttcttgtattttagaaattagatgtatgcatccattaaattttgcaaagatt |
41760924 |
T |
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| Q |
356 |
tccccatattaacaaagagcaagtttacatgccaaatttcttttt |
400 |
Q |
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| T |
41760925 |
t-cagatattaacaaagagcaagtttccatgccaaatttcttttt |
41760968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 41795382 - 41795457
Alignment:
| Q |
26 |
agaagaagaagttgaactatttgatgcagatgatgaagatggagataaattgtcggaaattgattacattctaatt |
101 |
Q |
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| T |
41795382 |
agaagaagaagttgaactatttgatgcagatgatgaagacggagataaagggtcggaaattgattacattctaatt |
41795457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 41760584 - 41760656
Alignment:
| Q |
29 |
agaagaagttgaactatttgatgcagatgatgaagatggagataaattgtcggaaattgattacattctaatt |
101 |
Q |
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| T |
41760584 |
agaagaagttgaactatttgatgcacatgatgatgagggagataaattgtcggaaattgattacattctaatt |
41760656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 23507400 - 23507455
Alignment:
| Q |
174 |
gtgctaagtactgaagagttaaacaaaaaatttgaagatttcattagaaagatgaa |
229 |
Q |
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| T |
23507400 |
gtgctaagcactgaggagttgaacaaaaaatttgatgacttcattaaaaagatgaa |
23507455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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