View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19040_high_5 (Length: 415)
Name: NF19040_high_5
Description: NF19040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19040_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 53425089 - 53424691
Alignment:
| Q |
1 |
agttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425089 |
agttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaag |
53424990 |
T |
|
| Q |
101 |
gtacaatctatagcgctctgcggtatatcaannnnnnnnnnnnnnnnnnnnnnnnncaatgatatatttctcatgtttgataattgttattgttaagggt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424989 |
gtacaatctatagcgctctgcggtatatcaatttattttttaatttttttaattttcaatgatatatttctcatgtttgataattgttattgttaagggt |
53424890 |
T |
|
| Q |
201 |
caagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagcaaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424889 |
caagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagcaaggt |
53424790 |
T |
|
| Q |
301 |
acgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataattaatc-nnnnnnnttattattgtttgttaaatgcaggatgt |
398 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53424789 |
acgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataattaatcaaaaaaaattattattgtttgttaaatgcaggatgt |
53424691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 48373647 - 48373753
Alignment:
| Q |
196 |
agggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagc |
295 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || |||||||| || |||| || || ||| |||||||||||||| || ||| ||||||| |
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| T |
48373647 |
agggtcaagccataaatttctcccctctttcaaaatctgccgattatccattgataactggaaagtctgctaagacaactactgctgacttaactgaagc |
48373746 |
T |
|
| Q |
296 |
aaggtac |
302 |
Q |
| |
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||||||| |
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| T |
48373747 |
aaggtac |
48373753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 48372459 - 48372558
Alignment:
| Q |
6 |
ttaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
105 |
Q |
| |
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|||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||||||||||| |||| ||||||| |||||||||| |||||||||| |
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| T |
48372459 |
ttaatgatgcaccttggatattaacggttgctgccaccactattgaccgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
48372558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 26097606 - 26097502
Alignment:
| Q |
1 |
agttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaag |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| | || ||||| ||||| || || |||||||| ||||||||||| |||| ||||||| |||||||||| ||||| |
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| T |
26097606 |
agttgttaatgacgctccttggatactaacggttgctgccactaccattgatcgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaag |
26097507 |
T |
|
| Q |
101 |
gtaca |
105 |
Q |
| |
|
||||| |
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| T |
26097506 |
gtaca |
26097502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 53309079 - 53308963
Alignment:
| Q |
1 |
agttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaag |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| || ||||||| |||||| || |||||| ||||| | |||||||| ||||||| |||||| ||||||||| || |
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| T |
53309079 |
agttgttaatgacgctccttggatattaactgttgtagccactaccatcgattgtgatatgcagtccaacgttgttttaggtagtggcaaagttattgag |
53308980 |
T |
|
| Q |
101 |
gtacaatctatagcgct |
117 |
Q |
| |
|
||||||| |||| |||| |
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| T |
53308979 |
gtacaatttataacgct |
53308963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 53432224 - 53432124
Alignment:
| Q |
7 |
taatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaa |
106 |
Q |
| |
|
|||||||||||||||||| || || |||| ||||| ||||| || ||||| |||||||||| |||| ||||||| ||| ||||||||||||||||| |
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| T |
53432224 |
taatgatgctccttggatattaaccgttggtgccacaactattgaccgtgaatttcagtccaacgttgtcttgggtaataaagaagttatcaaggtacaa |
53432125 |
T |
|
| Q |
107 |
t |
107 |
Q |
| |
|
| |
|
|
| T |
53432124 |
t |
53432124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 53320849 - 53320744
Alignment:
| Q |
7 |
taatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaa |
106 |
Q |
| |
|
|||||||||||| ||||| || || |||| |||||| || || || |||||||| ||||| ||| |||| ||||||| | |||||| |||||||||||| |
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| T |
53320849 |
taatgatgctccctggatattaaccgttggagccacaacaattgaccgtgatctccagtctaatgttgtcttgggtaatggcaaagtgatcaaggtacaa |
53320750 |
T |
|
| Q |
107 |
tctata |
112 |
Q |
| |
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||||| |
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| T |
53320749 |
actata |
53320744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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