View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19040_low_1 (Length: 675)

Name: NF19040_low_1
Description: NF19040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19040_low_1
NF19040_low_1
[»] chr1 (1 HSPs)
chr1 (19-662)||(50466772-50467416)


Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 662
Target Start/End: Original strand, 50466772 - 50467416
Alignment:
Q  19 ataatgcacctgttttttctgtgactaaacaaatgcttgtacactgatccatgtgatcatgggtcctaaaataatggcttagttgtagataaaagtaaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50466772 ataatgcacctgttttttctgtgactaaacaaatgcttgtacactgatccatgtgatcatgggtcctaaaataatggcttagttgtagataaaagtaaca 50466871  T
Q  119 cttagcaaacttgaaaatgaggtttgagtagaggtccccaacattatttcttatcaaattaaagccattaagcttttaatagtaaacatgacaaagaata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50466872 cttagcaaacttgaaaatgaggtttgagtagaggtccccaacattatttcttatcaaattaaagccattaagcttttaatagtaaacatgacaaagaata 50466971  T
Q  219 attgtaacctcatgatacataaaaggaatgataactatattacactaatgttgatgaatcaataagtactttggtagtgattacatccaatggatgcctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50466972 attgtaacctcatgatacataaaaggaatgataactatattacactaatgttgatgaatcaataagtactttggtagtgattacatccaatggatgcctt 50467071  T
Q  319 ctacttaaggagaaaactccacgtgaattttatattgaataactgtcatttaattttaggcccttgttttcacaagtctggttttactatagatcctcgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50467072 ctacttaaggagaaaactccacgtgaattttatattgaataactgtcatttaattttaggcccttgttttcacaagtctggttttactatagatcctcgt 50467171  T
Q  419 gaatctatatggatatttaatttcccacttgcactgttttgttgtcccattcttatgagaaaaatattg-tttcttttttgttttaagtcttacatatat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||    
T  50467172 gaatctatatggatatttaatttcccacttgcactgttttgttgtcccattcttatgagaaaaatattgttttttttttttttttaagtcttacatatat 50467271  T
Q  518 tttgttagttcagcagaaagataaataaaatctgataaataattattttgacggaatttgaatcccgaatctctcaaataaaataatcatatgaaaaaat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  50467272 tttgttagttcagcagaaagataaataaaatctgataaataattattttgacgaaatttgaatcccgaatctctcaaataaaataatcatatgagaaaat 50467371  T
Q  618 tattgatgaaaatgtttttctatcatatataaatttacacaggtt 662  Q
    ||||||||||||||||||||||| || ||||||||||||||||||    
T  50467372 tattgatgaaaatgtttttctattatgtataaatttacacaggtt 50467416  T

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