View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19041_high_1 (Length: 510)
Name: NF19041_high_1
Description: NF19041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19041_high_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 78 - 510
Target Start/End: Original strand, 47116531 - 47116963
Alignment:
| Q |
78 |
aacattttagttacaaatttcaaatcacataatatagtctattgagatgnnnnnnnnnnttaatattatttggtggaaaactggtaaggaaagagaaaat |
177 |
Q |
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| T |
47116531 |
aacattttagttacgaatttcaaatcacataatatagtctattgagaagaagaaaaaaaaaaaaattatttggtggaaaactggtaaggaaagagaaaat |
47116630 |
T |
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| Q |
178 |
gaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaagaaaatttccacgtcatacatctcattcaatgatgtt |
277 |
Q |
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| T |
47116631 |
gaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaagaaaagttccacgtcatacatctcattcaatgatgtt |
47116730 |
T |
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| Q |
278 |
atgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatacccttgttatttcatttccttatgatatctcnnnnnn |
377 |
Q |
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| T |
47116731 |
atgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatacccttgttatttcatttccttatgatatctctttttt |
47116830 |
T |
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| Q |
378 |
nctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaat |
477 |
Q |
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| T |
47116831 |
tctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaat |
47116930 |
T |
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| Q |
478 |
tcaaggagataaatattcataccttttaacgat |
510 |
Q |
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| T |
47116931 |
tcaaggagataaatattcataccttttaacgat |
47116963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 47120493 - 47120427
Alignment:
| Q |
17 |
acatggaagggggtggaagaaaaaagtaagtgcaaatacaagactgtttgcttttgttggtaacatt |
83 |
Q |
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| T |
47120493 |
acatggaagggggtggaagaaaaaaataagtgcaaatacaagactgtttgcttttgttggtaacatt |
47120427 |
T |
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