View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19041_high_5 (Length: 240)
Name: NF19041_high_5
Description: NF19041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19041_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 42935038 - 42934871
Alignment:
| Q |
44 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
143 |
Q |
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| T |
42935038 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
42934939 |
T |
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| Q |
144 |
gtgccaatctaagtctaattaacaactagaaaaaccagcaagaaaaattctgcaatcttaagctaatttgaaagaataaac |
224 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42934938 |
gtgccaatctaagtctaattaacaactaga-------------aaaattctgcaatcttaagctaatttgaaagaataaac |
42934871 |
T |
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