View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19041_low_3 (Length: 370)
Name: NF19041_low_3
Description: NF19041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19041_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 580561 - 580899
Alignment:
| Q |
15 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580561 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
580660 |
T |
|
| Q |
115 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580661 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
580760 |
T |
|
| Q |
215 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580761 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
580860 |
T |
|
| Q |
315 |
ttggaggtggtcgacatggatgccttggagagccttttg |
353 |
Q |
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| T |
580861 |
ttggaggtggtcgacatggatgccttggagagccttttg |
580899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 591866 - 591528
Alignment:
| Q |
15 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591866 |
gagatagagttgatcacgatgttttggctgagatggatgtcttgtataggtgcattaaagaagccctgagactccaccctccactaattatgttgctgag |
591767 |
T |
|
| Q |
115 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591766 |
aagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtcatatagttgctacatcccctgcatttgcaaacagg |
591667 |
T |
|
| Q |
215 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591666 |
ttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaagaagacaaggcagcaggggcattctcttacatttcct |
591567 |
T |
|
| Q |
315 |
ttggaggtggtcgacatggatgccttggagagccttttg |
353 |
Q |
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| T |
591566 |
ttggaggtggtcgacatggatgccttggagagccttttg |
591528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 80 - 336
Target Start/End: Original strand, 37434363 - 37434607
Alignment:
| Q |
80 |
ctgagactccaccctccactaattatgttgctgagaagctcacacagcgatttcagcgtcacaacaagagaggggaaagagtatgacattcccaagggtc |
179 |
Q |
| |
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|||||||||||||||||| | |||||| |||||||| ||||||| | ||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
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| T |
37434363 |
ctgagactccaccctccattgattatgccgctgagaaactcacacggagatttcagcgtcacaacaagagaagggaaaaagtatggaattcccaagggtc |
37434462 |
T |
|
| Q |
180 |
atat--agttgctacatcccctgcatttgcaaacaggttaccacacattttcaatgaccctgataagtatgatcctgataggtttgctgttgggagggaa |
277 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||| || | |||||| | |||||||| |
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| T |
37434463 |
atatagagttgctacatcccttgcatttgcaaacaggttacctcatattttcaatgatcctgataggt-------ttataggtat-------ggagggaa |
37434548 |
T |
|
| Q |
278 |
gaagacaaggcagcaggggcattctcttacatttcctttggaggtggtcgacatggatg |
336 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37434549 |
aaagacaaggtggcagaggcattctcttacatttcctttggaggtggtagacatggatg |
37434607 |
T |
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