View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19042_high_11 (Length: 255)
Name: NF19042_high_11
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19042_high_11 |
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| [»] scaffold1343 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 45783330 - 45783090
Alignment:
| Q |
1 |
ttatacatttaagatgaagttttctatgttttttgatgtctatttccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45783330 |
ttatacatttaagatgaagttttctatgttttttggtgtccatttccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttc |
45783231 |
T |
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| Q |
101 |
taattaacttcatatatctaatgagagatcatactatttatatcaaaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45783230 |
taattaacttcatatatctaatgagagatcatactatttatatcaaaagaaatccaatggtatgtgttctacttatcatttatttactacttagtatgat |
45783131 |
T |
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| Q |
201 |
cctactaattgaccaaaaccaaatatgaaattacctctgtg |
241 |
Q |
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| T |
45783130 |
cctactaattgaccaaaaccaaatatgaaattacctctgtg |
45783090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1343 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold1343
Description:
Target: scaffold1343; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 216 - 327
Alignment:
| Q |
1 |
ttatacatttaagatgaagttttctatgttttttgatgtctatttccataaatcaataaaatcagatgcctaaagaaaaattgataatgagctggttttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
216 |
ttatacatttaagatgaagttttctatgttttttgttgtccatatccataaaccaataaaatcagatgcctaaagaaaaactgataatgaactagttttc |
315 |
T |
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| Q |
101 |
taattaacttca |
112 |
Q |
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|||||||||||| |
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| T |
316 |
taattaacttca |
327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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