View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19042_high_15 (Length: 213)
Name: NF19042_high_15
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19042_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 13651194 - 13650989
Alignment:
| Q |
1 |
atatgctttgaaagtaaacaagctagttaacttgtttgtagaacatgatgttgatgaagttagtatgttggtggatgttccaagctgtgttactgttatt |
100 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651194 |
atatgctttgaaagaaaacaagccagttaacttgtttgtagaacatgatgttgatgaagttagtatgttggtggatgttccaagctgtgttactgttatt |
13651095 |
T |
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| Q |
101 |
aatagggaagttggacaaagttctcaggttgatgtaaatggagatggactagagaaggaaaaggtagataagaaaggaaaaggtgtgttggtgtgttctg |
200 |
Q |
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| T |
13651094 |
aatagggaagttggacaaagttctcaggttgatgtaaatggagatggactagagaaggaaaaggtagataagaaaggaaaaggtgtgttggtgtgttctg |
13650995 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
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|||||| |
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| T |
13650994 |
atgatg |
13650989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 47734000 - 47734205
Alignment:
| Q |
1 |
atatgctttgaaagtaaacaagctagttaacttgtttgtagaacatgatgttgatgaagttagtatgttggtggatgttccaagctgtgttactgttatt |
100 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47734000 |
atatgctttgaaagaaaacaagccagttaacttgtttgtagaacatgatgttgatgaagttagtatgttggtggatgttccaagctgtgttactgttatt |
47734099 |
T |
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| Q |
101 |
aatagggaagttggacaaagttctcaggttgatgtaaatggagatggactagagaaggaaaaggtagataagaaaggaaaaggtgtgttggtgtgttctg |
200 |
Q |
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| T |
47734100 |
aatagggaagttggacaaagttctcaggttgatgtaaatggagatggaatagagaaggaaaaggtagataagaaaggaaaaggtgtgttggtgtgttctg |
47734199 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
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|||||| |
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| T |
47734200 |
atgatg |
47734205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 41772721 - 41772516
Alignment:
| Q |
1 |
atatgctttgaaagtaaacaagctagttaacttgtttgtagaacatgatgttgatgaagttagtatgttggtggatgttccaagctgtgttactgttatt |
100 |
Q |
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||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
41772721 |
atatgctttgaaagtaaacaagccaattaacttttttgtagaacatgatgttgatgaagttagtaggttggtggatgttccaaactgtgttactgttagt |
41772622 |
T |
|
| Q |
101 |
aatagggaagttggacaaagttctcaggttgatgtaaatggagatggactagagaaggaaaaggtagataagaaaggaaaaggtgtgttggtgtgttctg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41772621 |
aatagggaagttggacaaagttctgaggttgatgtaaatggagaaggactagagaaggaaaaggtagataagaaaggaaaaggtgtgttggtgtgttctg |
41772522 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
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|||||| |
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| T |
41772521 |
atgatg |
41772516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 35597413 - 35597618
Alignment:
| Q |
1 |
atatgctttgaaagtaaacaagctagttaacttgtttgtagaacatgatgttgatgaagttagtatgttggtggatgttccaagctgtgttactgttatt |
100 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
35597413 |
atatgctttgaaagtaaacaagccagttaacttttttgtagaacatgatgttgatgaagttagtaggttggtggatgttccaaactgtgttactgttact |
35597512 |
T |
|
| Q |
101 |
aatagggaagttggacaaagttctcaggttgatgtaaatggagatggactagagaaggaaaaggtagataagaaaggaaaaggtgtgttggtgtgttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |
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| T |
35597513 |
aatagggaagttggacaaagttctcaggttgatgtaaatggagaaggactagagaaggaaaaggtagacaagaaaggaaaatgtgtgttggtgtgttatg |
35597612 |
T |
|
| Q |
201 |
atgatg |
206 |
Q |
| |
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|||||| |
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| T |
35597613 |
atgatg |
35597618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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