View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19042_high_6 (Length: 381)
Name: NF19042_high_6
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19042_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 366
Target Start/End: Complemental strand, 4180411 - 4180057
Alignment:
| Q |
12 |
atcatcacacgtgcatcagcaaccgatccgatccaacaagaaacatgaacaggcttattttcttcatgaaaaacaacctcatacactccaaaatcattcc |
111 |
Q |
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| T |
4180411 |
atcataacacgtgcatcagcaaccgacccaatccaacaagaaacatgaacaggcttattttcttcatgaaaaactacctcatacactccaaaatcattcc |
4180312 |
T |
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| Q |
112 |
atgatgcaatgcaattaatttgattcttaatgcccaattcattcaaagtgtatccactctttgtgacactttctacctcaatgacctccaaggattcttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4180311 |
atgatgcaatgcaattaatttgattcttaatgcccaattcattcaaagtgtatccactctttgtgacactttctacctcaatgacctccaaggattcttt |
4180212 |
T |
|
| Q |
212 |
aacaaccaaagtgaaactagaacctatttttgtgtctagcttttgttccacttcttcaatgcaaaacatggccaattccctccacatttctttgctaaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4180211 |
aacaaccaaagtgaaactagaacctatttttgtgtctagcttttgttccacttcttcaatgcaaaacatggccaattccctccacaattctttgctaaat |
4180112 |
T |
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| Q |
312 |
tttacattcttagtagtgattttgaatacaatactttgaactctgtttttgtttt |
366 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4180111 |
tttacatttttagtagtgattttgaatacaatactttgaactctgtttttgtttt |
4180057 |
T |
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