View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19042_low_1 (Length: 503)

Name: NF19042_low_1
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19042_low_1
NF19042_low_1
[»] chr3 (15 HSPs)
chr3 (13-486)||(39398823-39399296)
chr3 (74-389)||(38175582-38175898)
chr3 (30-187)||(9105275-9105433)
chr3 (30-185)||(11004404-11004560)
chr3 (30-182)||(21847109-21847264)
chr3 (30-182)||(21850199-21850354)
chr3 (30-182)||(54171924-54172081)
chr3 (30-139)||(9697586-9697697)
chr3 (30-182)||(54167344-54167501)
chr3 (30-182)||(43547723-43547878)
chr3 (251-371)||(43547946-43548057)
chr3 (30-92)||(43554292-43554355)
chr3 (248-371)||(9697807-9697921)
chr3 (255-366)||(43554795-43554897)
chr3 (99-187)||(755899-755989)
[»] chr4 (22 HSPs)
chr4 (30-388)||(31354678-31355034)
chr4 (30-315)||(31359151-31359442)
chr4 (30-303)||(49274397-49274668)
chr4 (30-223)||(41884925-41885117)
chr4 (262-385)||(35842967-35843091)
chr4 (30-182)||(53722007-53722160)
chr4 (30-187)||(8892619-8892778)
chr4 (30-187)||(10317062-10317220)
chr4 (30-182)||(31670090-31670244)
chr4 (29-182)||(3770841-3770999)
chr4 (29-182)||(44147022-44147180)
chr4 (30-182)||(44151558-44151715)
chr4 (30-139)||(27186142-27186255)
chr4 (255-385)||(43683484-43683605)
chr4 (337-388)||(31359439-31359490)
chr4 (37-119)||(43683731-43683813)
chr4 (64-187)||(53785880-53786004)
chr4 (248-371)||(27186365-27186479)
chr4 (271-371)||(50627765-50627857)
chr4 (30-88)||(50628029-50628087)
chr4 (113-182)||(50627946-50628016)
chr4 (317-368)||(41885201-41885253)
[»] chr5 (20 HSPs)
chr5 (30-371)||(10274546-10274877)
chr5 (30-371)||(10277204-10277535)
chr5 (30-182)||(30695293-30695446)
chr5 (29-182)||(16794107-16794265)
chr5 (30-182)||(7099374-7099531)
chr5 (30-182)||(7103943-7104100)
chr5 (30-182)||(12018731-12018888)
chr5 (30-182)||(12023289-12023446)
chr5 (30-182)||(16798669-16798826)
chr5 (30-177)||(32485994-32486143)
chr5 (30-133)||(40371789-40371892)
chr5 (29-182)||(19502306-19502462)
chr5 (50-182)||(43384972-43385105)
chr5 (78-187)||(20830327-20830437)
chr5 (30-107)||(40367680-40367757)
chr5 (30-187)||(26336804-26336964)
chr5 (30-119)||(37682036-37682127)
chr5 (30-107)||(36632314-36632391)
chr5 (29-89)||(37658731-37658792)
chr5 (78-133)||(20808694-20808749)
[»] chr1 (8 HSPs)
chr1 (30-371)||(10504436-10504768)
chr1 (30-133)||(16588532-16588635)
chr1 (29-182)||(39793830-39793984)
chr1 (30-182)||(43591825-43591978)
chr1 (29-91)||(26311521-26311583)
chr1 (30-91)||(26316013-26316074)
chr1 (255-371)||(3742707-3742814)
chr1 (99-187)||(17459040-17459127)
[»] chr2 (12 HSPs)
chr2 (30-303)||(41093824-41094098)
chr2 (30-371)||(35950263-35950595)
chr2 (28-185)||(8050837-8050995)
chr2 (30-182)||(8055392-8055545)
chr2 (30-182)||(36670503-36670660)
chr2 (30-182)||(36675051-36675208)
chr2 (30-182)||(12999468-12999622)
chr2 (30-107)||(6463506-6463583)
chr2 (268-371)||(13270845-13270940)
chr2 (99-186)||(34590284-34590370)
chr2 (30-85)||(13271075-13271131)
chr2 (43-130)||(29767953-29768041)
[»] chr6 (11 HSPs)
chr6 (68-220)||(6440827-6440979)
chr6 (30-182)||(17096278-17096431)
chr6 (30-182)||(27552114-27552267)
chr6 (30-182)||(8315507-8315661)
chr6 (30-178)||(8320050-8320199)
chr6 (30-119)||(27574795-27574884)
chr6 (29-182)||(17895727-17895882)
chr6 (30-182)||(17779914-17780068)
chr6 (30-182)||(14531791-14531945)
chr6 (30-108)||(17886921-17887000)
chr6 (66-215)||(2933197-2933346)
[»] chr8 (21 HSPs)
chr8 (29-385)||(33071917-33072262)
chr8 (149-303)||(11032659-11032812)
chr8 (30-385)||(42234504-42234851)
chr8 (30-182)||(28644562-28644715)
chr8 (30-182)||(43807485-43807640)
chr8 (30-182)||(43812044-43812199)
chr8 (30-185)||(30410330-30410486)
chr8 (30-182)||(197684-197841)
chr8 (30-182)||(202202-202359)
chr8 (30-182)||(312521-312678)
chr8 (30-182)||(317039-317196)
chr8 (268-385)||(1286856-1286972)
chr8 (30-91)||(38757003-38757064)
chr8 (268-381)||(1291562-1291676)
chr8 (30-130)||(41949802-41949902)
chr8 (30-107)||(41945339-41945416)
chr8 (58-186)||(27435190-27435314)
chr8 (30-72)||(30405918-30405960)
chr8 (82-185)||(30405821-30405925)
chr8 (149-182)||(1286739-1286772)
chr8 (411-479)||(26276833-26276901)
[»] chr7 (13 HSPs)
chr7 (30-182)||(27761397-27761550)
chr7 (30-183)||(35705634-35705789)
chr7 (29-182)||(27756845-27756999)
chr7 (29-182)||(7944636-7944794)
chr7 (30-182)||(7940083-7940240)
chr7 (36-139)||(47419626-47419729)
chr7 (30-182)||(22901154-22901309)
chr7 (255-388)||(733477-733599)
chr7 (30-107)||(7466591-7466669)
chr7 (42-178)||(37355573-37355710)
chr7 (42-187)||(13828101-13828248)
chr7 (43-182)||(733670-733811)
chr7 (255-291)||(8675192-8675228)
[»] scaffold0044 (2 HSPs)
scaffold0044 (29-182)||(49445-49603)
scaffold0044 (30-182)||(44865-45022)
[»] scaffold0440 (2 HSPs)
scaffold0440 (30-182)||(2980-3137)
scaffold0440 (30-182)||(7506-7662)
[»] scaffold0006 (1 HSPs)
scaffold0006 (32-161)||(60171-60302)


Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 39399296 - 39398823
Alignment:
Q  13 aatatacatgttggtcctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39399296 aatatacatgttggtcctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaat 39399197  T
Q  113 tttgttacaagttagttagagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39399196 tttgttacaagttagttagagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaact 39399097  T
Q  213 cttgtacatatttttactacttcaatatacaatcaattttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39399096 cttgtacatatttttactacttcaatatacaatcaattttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatc 39398997  T
Q  313 tgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatcaggtccttgtattcccttaatgcgt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  39398996 tgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcactatcaggtccttgtattcccttaatgcat 39398897  T
Q  413 ttggaaaggcttattgttatctataatgggatgagttcagctggtcaattcggtgattagtagtatgttacttt 486  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39398896 ttggaaaggcttattgttatctataatgggacgagttcagctggtcaattcggtgattagtagtatgttacttt 39398823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 74 - 389
Target Start/End: Complemental strand, 38175898 - 38175582
Alignment:
Q  74 ttagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttacttagcttgtact 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38175898 ttagtggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagattagggtttgttacttagcttgtact 38175799  T
Q  174 tcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttactacttcaatatacaatcaattttcatcaatcacataacc-tttc 272  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| || |||||  || |||||   ||||||||||||||||||||||||| ||||    
T  38175798 tcaagcaacctaaccaagtttgtatatataagctaaactcttgtacat-ttgttactttttaaatattacatcaattttcatcaatcacataaccttttc 38175700  T
Q  273 tcttctctcattctctct-ataattcacaa-attcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctt 370  Q
    |||||||||| ||||||| |||| |||||| |  |  |||||||  ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||    
T  38175699 tcttctctcaatctctctcataa-tcacaataaccgaaaatctgtgaaaccctagaaactacaaaactgtttctgatttcattgcttgttgaacaagatt 38175601  T
Q  371 tgttgtgctgcgctatcag 389  Q
    ||| ||| |||||||||||    
T  38175600 tgtagtgttgcgctatcag 38175582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 9105275 - 9105433
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| | || ||||||||||||| | ||||||||||| |||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaac 187  Q
    |||| ||| |  ||||| | ||| ||||||||| | |||||| ||||||||||||||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaac 9105433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 11004560 - 11004404
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| | || || ||||||||||  |||||||||||| |||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaaccta 185  Q
    |||| |||||  ||||| | ||| ||||||||| | | |||| ||||||||||||||    
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaaccta 11004404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 21847109 - 21847264
Alignment:
Q  30 tgttagtttgtttt-aattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |    
T  21847109 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21847208  T
Q  128 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  21847209 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 21847264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 21850199 - 21850354
Alignment:
Q  30 tgttagtttgtttt-aattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| |    
T  21850199 tgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 21850298  T
Q  128 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  21850299 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 21850354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 54172081 - 54171924
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  54172081 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54171982  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  54171981 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 9697586 - 9697697
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttag-attcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |  || ||||||||||||| ||||||||||||| |    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  128 ttagagattagc 139  Q
    |||||| |||||    
T  9697686 ttagaggttagc 9697697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 54167501 - 54167344
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  54167501 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 54167402  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| ||| |  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  54167401 ttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 43547723 - 43547878
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattc-agtttgttatgaattttgttacaagttag 127  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||| | ||  ||||||||||||| ||||||||||||| |    
T  43547723 tgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagtttg 43547822  T
Q  128 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| ||| |  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  43547823 ttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaac 43547878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 43547946 - 43548057
Alignment:
Q  251 ttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttc 350  Q
    ||| |||||| ||| | ||||||||||||||||||||| |||        ||||||||||||| | |||||||| ||||||||||| ||||||||  |||    
T  43547946 ttcttcaatctcattatctttctcttctctcattctctttat--------aattcataaatctac-aaaccctaaaaactacaaaattgcttctggtttc 43548036  T
Q  351 attgcttgttgaacaagcttt 371  Q
    |||||||||||||||||||||    
T  43548037 attgcttgttgaacaagcttt 43548057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 43554292 - 43554355
Alignment:
Q  30 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcacattt 92  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||    
T  43554292 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattt 43554355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 371
Target Start/End: Original strand, 9697807 - 9697921
Alignment:
Q  248 attttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgag 347  Q
    |||||| ||| || | ||| |||| ||||||||||||||||||||||||||        ||||||| || | ||||||||||||||||| ||||||||      
T  9697807 attttcttcattctcttaatctttttcttctctcattctctctataattca--------taaatctacaga-ccctagaaactacaaaattgcttctggt 9697897  T
Q  348 ttcattgcttgttgaacaagcttt 371  Q
    ||||||||||||||||||||||||    
T  9697898 ttcattgcttgttgaacaagcttt 9697921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 366
Target Start/End: Original strand, 43554795 - 43554897
Alignment:
Q  255 tcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattg 354  Q
    |||||| ||||| |||||||||||||||||||||||||        ||||||||||||| | ||||||||||||||| |||| ||||| ||  |||||||    
T  43554795 tcaatctcataatctttctcttctctcattctctctat--------aattcataaatctac-aaaccctagaaactataaaattgcttatggtttcattg 43554885  T
Q  355 cttgttgaacaa 366  Q
    ||||||||||||    
T  43554886 cttgttgaacaa 43554897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 755899 - 755989
Alignment:
Q  99 agtttgttatgaattttgttacaagttagttagagattagctcataa--ggttagggtttgttacttagcttgtacttcaagcaacctaac 187  Q
    |||||||| |||| ||||||||||||| |||||||  || || ||||  |||||||||||||||| | |||||| |||||||| |||||||    
T  755899 agtttgttttgaagtttgttacaagtttgttagagtgtaactaataaaaggttagggtttgttacattgcttgtgcttcaagctacctaac 755989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 31354678 - 31355034
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcagtt-gttatgaattttgttacaagttactt 31354776  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  31354777 agggattagctcataaggttagggtttgttacttagcttgtacgtcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-ttttac 31354875  T
Q  230 tacttcaatatacaatcaattttcatcaatcacataacctttctcttctctc-attctctctataattcacaaattcataaatctgcaaaaccctagaaa 328  Q
     |||| |||||||| |||| |||||||||||  ||||| | | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  31354876 aacttaaatatacattcaa-tttcatcaatcgtataacttctatcttctctcaattctctctataattcacaaattcataaatatgcaaaaccctagaaa 31354974  T
Q  329 ctacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatca 388  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  31354975 ctacaaatctgcttacgagttcattgcttgttgaacaagctttgttgtactgcgctatca 31355034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 315
Target Start/End: Original strand, 31359151 - 31359442
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31359151 tgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagtt 31359250  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  31359251 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-ttttac 31359349  T
Q  230 tacttcaatatacaatcaattttcatcaatcacataacctttctcttctctc--------attctctctataattcacaaattcataaatctgc 315  Q
     | |||||| || | |||| |||||||||||| ||||| | |||||||||||        ||||| ||||||||||||||||||||||||||||    
T  31359350 aatttcaatttatattcaa-tttcatcaatcatataacttctctcttctctcttctctcaattctgtctataattcacaaattcataaatctgc 31359442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 30 - 303
Target Start/End: Complemental strand, 49274668 - 49274397
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49274668 tgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaattt-gttacaagttagtt 49274570  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||    
T  49274569 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-tgttac 49274471  T
Q  230 tacttcaat-atacaatcaattttcatcaatcacataacctttctcttctctc-attctctctataattcacaaat 303  Q
    ||||||||| |||||||  |  ||| ||||| | |||||| |||||||||||| ||||||||| ||||||||||||    
T  49274470 tacttcaataatacaat-tacattcttcaattatataacc-ttctcttctctcaattctctctctaattcacaaat 49274397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 41884925 - 41885117
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattt-gttacaagttagtt 41885023  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatat 223  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  41885024 agagattagctcataagattagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataaactaaactcttgtacatat 41885117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 262 - 385
Target Start/End: Original strand, 35842967 - 35843091
Alignment:
Q  262 cataacctttctcttctctca-ttctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgtt 360  Q
    |||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  35842967 cataacttctctcttctctcaattctctctctaattcacaaattcataaatctgcaaaaccctaaaaactacaaatctgcttctgagttcattgtttgtt 35843066  T
Q  361 gaacaagctttgttgtgctgcgcta 385  Q
    |||||||||||||||||||||||||    
T  35843067 gaacaagctttgttgtgctgcgcta 35843091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 53722007 - 53722160
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| ||||||||||||| |||    
T  53722007 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 53722106  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||  ||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  53722107 agaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 53722160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 8892778 - 8892619
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| | || ||||||||||||| |||||||||| || ||    
T  8892778 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttgt 8892679  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaac 187  Q
    |||||||||||  ||||| | ||| ||||||||| | |||||| ||||||||||| ||||    
T  8892678 tagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaac 8892619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 10317220 - 10317062
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| || | |  ||||||||||||| ||||||||||||| |||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaac 187  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||| ||||    
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaac 10317062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 31670090 - 31670244
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || | || ||||||||||||| ||||||||||||| ||    
T  31670090 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttgt 31670189  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| |||||  ||||| | ||| ||||||||| | |||| | |||||||||||    
T  31670190 tagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaac 31670244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 3770841 - 3770999
Alignment:
Q  29 ctgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagtta 126  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||||||     
T  3770841 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 3770940  T
Q  127 gttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  3770941 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 44147022 - 44147180
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagtta 126  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||||||     
T  44147022 ctgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44147121  T
Q  127 gttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  44147122 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44147180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 44151558 - 44151715
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  44151558 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44151657  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  44151658 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 27186142 - 27186255
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttag--attcag-tttgttatgaattttgttacaagtt 125  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |   || || ||||||||||| |||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  126 agttagagattagc 139  Q
     ||||||| |||||    
T  27186242 tgttagaggttagc 27186255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 385
Target Start/End: Complemental strand, 43683605 - 43683484
Alignment:
Q  255 tcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattg 354  Q
    |||||| |||||  ||||||| ||||||||||||||||||||||        ||||||| |||| |||||||||||| |||| ||||||||  |||||||    
T  43683605 tcaatctcataatttttctctcctctcattctctctataattca--------taaatctacaaa-ccctagaaactaaaaaattgcttctggtttcattg 43683515  T
Q  355 cttgttgaacaagctttgttgtgctgcgcta 385  Q
    ||||||||||||||||||||||| |||||||    
T  43683514 cttgttgaacaagctttgttgtgttgcgcta 43683484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 31359439 - 31359490
Alignment:
Q  337 ctgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatca 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31359439 ctgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatca 31359490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 43683813 - 43683731
Alignment:
Q  37 ttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgtta 119  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||||||||| || | || ||||||||||||| |||||||    
T  43683813 ttgttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta 43683731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 53785880 - 53786004
Alignment:
Q  64 ataatcacaattagtggttaatcacatttaga--ttcagtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttac 161  Q
    ||||||||| | |||||||||||||||||||   ||  |||||||| |||||| |||||||||| |||||| | ||||| |||  |||||||||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaattt-gttacaagtttgttagaaactagcttatatagttagggtttgttac 53785978  T
Q  162 ttagcttgtacttcaagcaacctaac 187  Q
     |||||||| ||||||||||||||||    
T  53785979 atagcttgtgcttcaagcaacctaac 53786004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 371
Target Start/End: Original strand, 27186365 - 27186479
Alignment:
Q  248 attttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgag 347  Q
    |||||| ||| || | ||| |||| ||||||||||||||||||||||||||        ||||||| || | ||||||||||||||||| ||||||||      
T  27186365 attttcttcattctcttaatctttttcttctctcattctctctataattca--------taaatctacaga-ccctagaaactacaaaattgcttctggt 27186455  T
Q  348 ttcattgcttgttgaacaagcttt 371  Q
    ||||||||||||||||||||||||    
T  27186456 ttcattgcttgttgaacaagcttt 27186479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 50627857 - 50627765
Alignment:
Q  271 tctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttct-gagttcattgcttgttgaacaagct 369  Q
    ||||||||||||||||||||||||||||        ||||||| |||| ||||||||||||||||| ||||||| |  ||||||||||||||||||||||    
T  50627857 tctcttctctcattctctctataattca--------taaatctacaaa-ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagct 50627767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 50628087 - 50628029
Alignment:
Q  30 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac 88  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||| |||| ||||||||    
T  50628087 tgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcac 50628029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 50628016 - 50627946
Alignment:
Q  113 tttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||||||||| ||||||| |||||  ||||| | ||| ||||||||| | ||||||||||||||||||    
T  50628016 tttgttacaagtttgttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaac 50627946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 41885201 - 41885253
Alignment:
Q  317 aaaccctagaaactacaaaactgcttct-gagttcattgcttgttgaacaagc 368  Q
    |||||||||||||||||||| | ||||| |  |||||||||||||||||||||    
T  41885201 aaaccctagaaactacaaaatttcttctggttttcattgcttgttgaacaagc 41885253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 371
Target Start/End: Original strand, 10274546 - 10274877
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||    
T  10274646 agagattagctcataaggttagggtttgttatttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-tttcac 10274744  T
Q  230 tacttcaatatacaatcaattttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaac 329  Q
    ||||||||||||||| | |  |||||||||   |||| |||||||||||||||||||||||||        |||| |||||||| | |||||||||||||    
T  10274745 tacttcaatatacaa-ctacattcatcaattctataatctttctcttctctcattctctctat--------aatttataaatctac-aaaccctagaaac 10274834  T
Q  330 tacaaaactgcttct-gagttcattgcttgttgaacaagcttt 371  Q
    ||  ||| ||||||| |  ||||||||||||||||||||||||    
T  10274835 tatgaaattgcttctcgttttcattgcttgttgaacaagcttt 10274877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 371
Target Start/End: Original strand, 10277204 - 10277535
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10277204 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10277303  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||    
T  10277304 agagattagctcataaggttagggtttgttacttagcttgtattttaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-tttcac 10277402  T
Q  230 tacttcaatatacaatcaattttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaac 329  Q
    ||||||||||||||||  |  ||| |||||   |||| |||||||||||||||||||||||||        ||||||||||||| | ||||| |||||||    
T  10277403 tacttcaatatacaat-tacattcttcaattctataatctttctcttctctcattctctctat--------aattcataaatctac-aaaccttagaaac 10277492  T
Q  330 tacaaaactgcttct-gagttcattgcttgttgaacaagcttt 371  Q
    || |||| ||||||| |  ||||||||||||||||||||||||    
T  10277493 taaaaaattgcttctggttttcattgcttgttgaacaagcttt 10277535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 30695293 - 30695446
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| ||||||||||||| |||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaac 30695446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 16794107 - 16794265
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagtta 126  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||||||||     
T  16794107 ctgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 16794206  T
Q  127 gttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  16794207 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 7099531 - 7099374
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  7099531 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7099432  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  7099431 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 12023289 - 12023446
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  12023289 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12023388  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  12023389 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 16798669 - 16798826
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  16798669 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16798768  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  16798769 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 32486143 - 32485994
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||||| | || ||||||||||||| ||||||||||||| ||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaa 177  Q
    ||||| |||||  ||||| | ||| ||||||||| | |||||| ||||||    
T  32486043 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaa 32485994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 40371892 - 40371789
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| | || |||||||||||||  |||||||||||| |||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  130 agag 133  Q
    ||||    
T  40371792 agag 40371789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 19502306 - 19502462
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaa-tcacatttagattcagtttgttatgaattttgttacaagtta 126  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||| |||||||| | || ||||||||||||| |||||||||||||     
T  19502306 ctgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagttt 19502405  T
Q  127 gttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||| ||||   ||||| | ||| ||||||||| | | |||| |||||||||||    
T  19502406 gttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaac 19502462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 43384972 - 43385105
Alignment:
Q  50 agtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt- 148  Q
    ||||||||||||||||||||| |||||||||||||||||||||   || ||||||||||||| ||||||||||||| ||||||  |||||  ||||  |     
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  149 tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||||||||| | | |||| |||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaac 43385105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 20830437 - 20830327
Alignment:
Q  78 tggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagcttgtacttca 176  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||  ||||| |  || ||||||||| | |||||| |||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  177 agcaacctaac 187  Q
    |||||| ||||    
T  20830337 agcaacttaac 20830327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 40367757 - 40367680
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| | || |||||||||    
T  40367757 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta 40367680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 26336964 - 26336804
Alignment:
Q  30 tgttagtttgttttaattcaagttt-agtttagtgataatcacaattagtggttaatcacatttag-attcagtttgttatgaattttgttacaagttag 127  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||  ||| |||||||||||| |  || ||||||||||||  ||||||||| ||| |    
T  26336964 tgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgtttg 26336865  T
Q  128 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaac 187  Q
    |||||| |||||  ||||| | ||| ||||||||| | | |||| ||||||||||| ||||    
T  26336864 ttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaac 26336804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 37682036 - 37682127
Alignment:
Q  30 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgtta 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | || | || ||||||||||||| |||||||    
T  37682036 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtta 37682127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 36632314 - 36632391
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| || | || |||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtttgtta 36632391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 37658731 - 37658792
Alignment:
Q  29 ctgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcaca 89  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||    
T  37658731 ctgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcaca 37658792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 20808749 - 20808694
Alignment:
Q  78 tggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagag 133  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||| |||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagag 20808694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 30 - 371
Target Start/End: Original strand, 10504436 - 10504768
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10504436 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10504535  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  10504536 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-ttttac 10504634  T
Q  230 tacttcaat-atacaatcaattttcatcaatcacataacctttctcttctctc-attctctctataattcacaaattcataaatctgcaaaaccctagaa 327  Q
    ||||||||| |||||||  |  ||| |||||   |||||| |||||||||||| |||||||||||        ||||||||||||| | |||||||||||    
T  10504635 tacttcaataatacaat-tacattcttcaattctataacc-ttctcttctctcaattctctctat--------aattcataaatctac-aaaccctagaa 10504723  T
Q  328 actacaaaactgcttctg-agttcattgcttgttgaacaagcttt 371  Q
    ||||||||| ||||||||   ||||||||||||||||||||||||    
T  10504724 actacaaaattgcttctgtttttcattgcttgttgaacaagcttt 10504768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 16588635 - 16588532
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| ||||||||||||| |||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  130 agag 133  Q
    ||||    
T  16588535 agag 16588532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 39793830 - 39793984
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  | || ||||||||||||| ||||||||||||| ||    
T  39793830 ctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgt 39793929  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39793930 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 39793984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 43591978 - 43591825
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||   || ||||||||||||| ||||||||||  | |||    
T  43591978 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgtt 43591879  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| |||||  ||||  | ||| ||||||||| | |||||| |||||||||||    
T  43591878 agaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaac 43591825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 26311521 - 26311583
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26311521 ctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacatt 26311583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 26316013 - 26316074
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26316013 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacatt 26316074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 371
Target Start/End: Original strand, 3742707 - 3742814
Alignment:
Q  255 tcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattg 354  Q
    |||||| |||||  |||||||||| |||||||||||||||||||        ||||||| |||| || || ||||||||||| ||||| ||| |||||||    
T  3742707 tcaatctcataatatttctcttctttcattctctctataattca--------taaatctacaaacccata-aaactacaaaattgcttttgatttcattg 3742797  T
Q  355 cttgttgaacaagcttt 371  Q
    |||||||||||||||||    
T  3742798 cttgttgaacaagcttt 3742814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 17459127 - 17459040
Alignment:
Q  99 agtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaac 187  Q
    |||||||| ||||||  |||||||||| ||| |||| ||||| ||   ||||||||||||||| |||||||| ||||||||||||||||    
T  17459127 agtttgttttgaatta-gttacaagtttgttggagaatagcttatttagttagggtttgttacatagcttgtgcttcaagcaacctaac 17459040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 41093824 - 41094098
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||||||| ||||||    
T  41093924 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaatcaagtttgtgtatataagctaaactcttgtacata-ttttac 41094022  T
Q  230 tacttcaatatacaatca-attttcatcaatcacataacctttctcttctctca--ttctctctataattcacaaat 303  Q
    |||||||||||||| |||  |||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  41094023 tacttcaatatacattcattttttcagcaatcacataacctttctcttctctcaatttctctcta-aattcacaaat 41094098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 371
Target Start/End: Complemental strand, 35950595 - 35950263
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35950595 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagtt 35950496  T
Q  130 agagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttac 229  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||    
T  35950495 agagattagctcgtaaggttagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-ctttac 35950397  T
Q  230 tacttcaat-atacaatcaattttcatcaatcacataacctttctcttctctc-attctctctataattcacaaattcataaatctgcaaaaccctagaa 327  Q
    ||||||||| |||||||  |  ||| |||||   |||||| |||||||||||| |||||||||||        |||||||| | || | |||||||||||    
T  35950396 tacttcaataatacaat-tacattcttcaattctataacc-ttctcttctctcaattctctctat--------aattcatatacctac-aaaccctagaa 35950308  T
Q  328 actacaaaactgcttct-gagttcattgcttgttgaacaagcttt 371  Q
    ||||||||| ||||||| |  ||||||||||||||||||||||||    
T  35950307 actacaaaattgcttctggttttcattgcttgttgaacaagcttt 35950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 8050837 - 8050995
Alignment:
Q  28 cctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    || ||||||||||||| ||||||||||||| |    
T  8050837 cctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttg 8050936  T
Q  128 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaaccta 185  Q
    |||||| ||||   ||||| | ||| ||||||||| | |||||| ||||||||||||||    
T  8050937 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaaccta 8050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 8055392 - 8055545
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    || ||||||||||||| |||||| |||||| |||    
T  8055392 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgtt 8055491  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  8055492 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 8055545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 36670503 - 36670660
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  36670503 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36670602  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  36670603 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 36675051 - 36675208
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  36675051 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 36675150  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  36675151 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 12999622 - 12999468
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||| | || ||||||||||||| ||||||||||||| ||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| |||||  ||||| | ||| ||||||||| |  ||||| |||||||||||    
T  12999522 tagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaac 12999468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 6463583 - 6463506
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta 6463506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 13270940 - 13270845
Alignment:
Q  268 ctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttct-gagttcattgcttgttgaacaa 366  Q
    |||||||||||||||||||||||||||||||        ||||||| |||| ||||||||||||||||| ||||||| |  |||||||||||||||||||    
T  13270940 ctttctcttctctcattctctctataattca--------taaatctacaaa-ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaa 13270850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 34590284 - 34590370
Alignment:
Q  99 agtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttacttagcttgtacttcaagcaacctaa 186  Q
    |||||||||||||||| |||||||||| |||||||||||||  |||  ||||||||||||||  |||||||| ||| |||||||||||    
T  34590284 agtttgttatgaattt-gttacaagtttgttagagattagcatatagagttagggtttgttatatagcttgtgctttaagcaacctaa 34590370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 13271131 - 13271075
Alignment:
Q  30 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaat 85  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaat 13271075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  43 taattcaagtttagtttagtgataatcacaatt-agtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtta 130  Q
    ||||||||||||||||||||||||||||  ||| | || || |||||| || | || |||||||| | || ||||||||||||| ||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 68 - 220
Target Start/End: Complemental strand, 6440979 - 6440827
Alignment:
Q  68 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttacttagct 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttacttagct 6440880  T
Q  168 tgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtaca 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  6440879 tgtacttcaagcaacctaaccaaacttgtgtatataagctaaaatctagtaca 6440827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 17096431 - 17096278
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | || ||||||||||||| ||||||||||||| |||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| |||||  ||||| | ||  ||||||||| | |||||| |||||||||||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaac 17096278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 27552267 - 27552114
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| ||||||||| ||| |||    
T  27552267 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgtt 27552168  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    | |  |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  27552167 aaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 27552114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 8315661 - 8315507
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagttagt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| ||    
T  8315661 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttgt 8315562  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  8315561 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 8315507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 8320199 - 8320050
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  | || ||||||||||||| ||||||||||||| |||    
T  8320199 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgtt 8320100  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaag 178  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||    
T  8320099 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaag 8320050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 27574884 - 27574795
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgtta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||    
T  27574884 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta 27574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 17895882 - 17895727
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttag 127  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||   || |||||||| |||| ||||||||||||| |    
T  17895882 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttg 17895783  T
Q  128 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  ||||| | |||  |||||||| | |||||| |||||||||||    
T  17895782 ttagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaac 17895727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 17779914 - 17780068
Alignment:
Q  30 tgttagtttgtttt-aattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||| | || ||||||||||||| ||||||| ||||| ||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  129 tagagattagctcataag-gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||  |||   |||||  |||| ||||||||| | |||||| |||||||||||    
T  17780014 tagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaac 17780068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 14531945 - 14531791
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||| | || |||||||||||| | || |||| |||||||| ||||||||| ||| ||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| |||||  ||||| | ||| ||||||||| | |||||| ||| |||||||    
T  14531845 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaac 14531791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 17887000 - 17886921
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttat 108  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||| | || ||||||||||    
T  17887000 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttat 17886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 2933197 - 2933346
Alignment:
Q  66 aatcacaattagtggttaatcacatttaga--ttcagtttgttatgaattttgttacaagttagttagagattagctcataaggttagggtttgttactt 163  Q
    ||||||| |||||||||||||||||| ||   ||  ||||||||||||||| |||||||||| || ||| | ||| | |||  |||| |||||||||| |    
T  2933197 aatcacacttagtggttaatcacattaagtgtttgtgtttgttatgaattt-gttacaagtttgtaagaaactagtttatagagttaaggtttgttacat 2933295  T
Q  164 agcttgtacttcaagcaacctaaccaaacttgta-tatataagctaaactctt 215  Q
    ||||||| |||||||||| ||||| ||  || || ||||||||||||||||||    
T  2933296 agcttgtgcttcaagcaatctaactaa--ttctagtatataagctaaactctt 2933346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 385
Target Start/End: Original strand, 33071917 - 33072262
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||   || ||||||||||||| ||||||||||||| ||    
T  33071917 ctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgt 33072016  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatattttt 227  Q
    | ||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||| || | | || | | |||||||||| | ||| | |  |||||||     
T  33072017 tggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacat-tgtatataagct-acctcctttgtatattttc 33072114  T
Q  228 acta-cttcaatatacaatcaattttcatcaatcacataacctttctcttctctc-attctctctataattcacaaattcataaatctgcaaaaccctag 325  Q
    | || | |||||| ||||     |||||||      ||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  33072115 attagcatcaata-acaa-----tttcatc------ataacttctctcttctctcaattctctccataattcacaaattcataaatctgcaaaaccctag 33072202  T
Q  326 aaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 385  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33072203 aaactacaaatttgcttctgagttcattgcttgttgaacaagctttgttgtactgcgcta 33072262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 149 - 303
Target Start/End: Original strand, 11032659 - 11032812
Alignment:
Q  149 tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactcttgtacatatttttactacttcaatatacaatcaa 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  11032659 tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtgtatataagctaaactcttgtacata-tgttactacttcaatatacattcaa 11032757  T
Q  249 ttttcatcaatcacataacctttctcttctctca--ttctctctataattcacaaat 303  Q
     |||||||||||| ||||| |||||| |||||||  |||||||||| ||||||||||    
T  11032758 -tttcatcaatcatataacttttctcctctctcaatttctctctat-attcacaaat 11032812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 42234851 - 42234504
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| |||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacctaaccaaacttgtatatataagctaaactc-ttgtacatattttt 227  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||| || | | || | | ||||||| |||   || ||||| || ||  |    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacat-tgtatataaactaccttctttgtatattttcat 42234653  T
Q  228 actacttcaat-atacaatcaattttcatcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctaga 326  Q
    |  | |||||| |||||||  |  ||| |||||   |||| |||||||||||||||||||||||||        ||||||||||||| | |||||||| |    
T  42234652 aagatttcaataatacaat-tacattcttcaattctataatctttctcttctctcattctctctat--------aattcataaatctac-aaaccctaaa 42234563  T
Q  327 aactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 385  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42234562 aactacaaaattgcttctggtttcattgcttgttgaacaagctttgttgtgctgcgcta 42234504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 28644562 - 28644715
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| ||||||||||||| |||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 28644715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 43807640 - 43807485
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||| ||||||||||||| |||    
T  43807640 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43807541  T
Q  130 agagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  43807540 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||| ||||||||||||| |||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  130 agagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 30410486 - 30410330
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || | ||||||||||| ||||||||||||| |||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaaccta 185  Q
    |||| ||||   ||||| | |||  |||||||| | |||||||||||||||||||||    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaaccta 30410330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 197841 - 197684
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  197841 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 197742  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  197741 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 202359 - 202202
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  202359 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 202260  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  202259 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 312678 - 312521
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  312678 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 312579  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  312578 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 317196 - 317039
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  317196 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 317097  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  317096 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 1286856 - 1286972
Alignment:
Q  268 ctttctcttctctcattctctctataattcacaaattca-taaatctgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgttgaacaa 366  Q
    ||||||||||||||| | |||||| ||||||| ||| || |||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  1286856 ctttctcttctctcaatttctcta-aattcactaatacactaaacctacaaaaccctagaaactacaaa-ctgcttctgatttcattgcttgttgaacaa 1286953  T
Q  367 gctttgttgtgctgcgcta 385  Q
    ||||||||||| |||||||    
T  1286954 gctttgttgtgttgcgcta 1286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 38757003 - 38757064
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacatt 38757064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 1291562 - 1291676
Alignment:
Q  268 ctttctcttctctca--ttctctctataattcacaaattca-taaatctgcaaaaccctagaaactacaaaactgcttctgagttcattgcttgttgaac 364  Q
    |||||||||||||||  ||||||||| ||||||| ||| || |||| |||||||||||||||||||||||| |||||| ||| ||||||| ||||||||     
T  1291562 ctttctcttctctcaatttctctcta-aattcactaatacactaaacctgcaaaaccctagaaactacaaa-ctgcttatgatttcattgtttgttgaat 1291659  T
Q  365 aagctttgttgtgctgc 381  Q
    |||||||||||||||||    
T  1291660 aagctttgttgtgctgc 1291676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 41949802 - 41949902
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||||||| |  | || |||||||| |||| ||||||||||||| |||    
T  41949802 tgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggtt 41949901  T
Q  130 a 130  Q
    |    
T  41949902 a 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 41945339 - 41945416
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| || | || |||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta 41945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 27435314 - 27435190
Alignment:
Q  58 ttagtgataatcacaattagtggttaatcacatt-tagattcagtttgttatgaatt-ttgttacaagttagttagagattagctcataaggttagggtt 155  Q
    |||||||||||| || |||||||||||||||||| | | || |||||||||||| || |||||||||||| |      |||||| ||||  |||||||||    
T  27435314 ttagtgataatctcacttagtggttaatcacattattgttttagtttgttatgagttattgttacaagtttg------attagcacatagagttagggtt 27435221  T
Q  156 tgttacttagcttgtacttcaagcaacctaa 186  Q
    |||||| |||||||| |||||||||||||||    
T  27435220 tgttacatagcttgtgcttcaagcaacctaa 27435190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 30405960 - 30405918
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcaca 72  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30405960 tgttagtttgttttaattcaagtttagtttagtgataatcaca 30405918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 30405925 - 30405821
Alignment:
Q  82 taatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagca 180  Q
    ||||||||||  | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | |||  |||||||| | ||||||||||||||||    
T  30405925 taatcacattctgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagaatttgttacattgcttgtacttcaagca 30405826  T
Q  181 accta 185  Q
    |||||    
T  30405825 accta 30405821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 1286739 - 1286772
Alignment:
Q  149 tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||||||||||| ||||||||||||||||||    
T  1286739 tagggtttgttactttgcttgtacttcaagcaac 1286772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 26276901 - 26276833
Alignment:
Q  411 gtttggaaaggcttattgttatctataatgggatgagttcagctggtcaattcggtgattagtagtatg 479  Q
    ||||||||||||||  ||||||||||||||||  |||| || || |||||||| ||||| | |||||||    
T  26276901 gtttggaaaggcttgctgttatctataatggggagagtacaacttgtcaattctgtgataaatagtatg 26276833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 27761397 - 27761550
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||| ||||||||||||| |||    
T  27761397 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 27761496  T
Q  130 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||| || |   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  27761497 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaac 27761550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 35705634 - 35705789
Alignment:
Q  30 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttg-ttatgaattttgttacaagttagt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||| ||||| | ||||||||||||| ||    
T  35705634 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttgt 35705733  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaacc 183  Q
    ||||| |||||  ||||| | ||| ||||||||| | |||||| ||||||||||||    
T  35705734 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacc 35705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 27756845 - 27756999
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  | || ||||||||||||| ||||||||||||| ||    
T  27756845 ctgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgt 27756944  T
Q  129 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| || |   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  27756945 tagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaac 27756999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 7944794 - 7944636
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagtta 126  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| |||||||||||||     
T  7944794 ctgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7944695  T
Q  127 gttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  7944694 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 7940240 - 7940083
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  7940240 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7940141  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  7940140 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 47419729 - 47419626
Alignment:
Q  36 tttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagat 135  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |||||||||||||  |||||| |    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  136 tagc 139  Q
    ||||    
T  47419629 tagc 47419626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 22901154 - 22901309
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcac-atttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| | || | || ||||||||||||| ||||||||||||| |    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  128 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  ||||| | ||| ||||||||| | |||||| |||||||||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaac 22901309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 388
Target Start/End: Complemental strand, 733599 - 733477
Alignment:
Q  255 tcaatcacataacctttctcttctctcattctctctataattcacaaattcataaatctgcaaaaccctagaaactacaaaactgcttctgagttcattg 354  Q
    |||||| ||||| |||||||||||||||||||||||||||||||        ||||||| |||| |||||||||| | |||| ||||||||  |||||||    
T  733599 tcaatctcataatctttctcttctctcattctctctataattca--------taaatctacaaa-ccctagaaacaaaaaaattgcttctggtttcattg 733509  T
Q  355 cttgttgaacaagctttgttgtgctgcgctatca 388  Q
    ||||||||||||||||  | ||||||||||||||    
T  733508 cttgttgaacaagctt--tagtgctgcgctatca 733477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 7466669 - 7466591
Alignment:
Q  30 tgttagtttgttttaattcaagtttag-tttagtgataatcacaattagtggttaatcacatttagattcagtttgtta 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||| | || |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta 7466591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 37355573 - 37355710
Alignment:
Q  42 ttaattcaagtttagtttagtgataatcacaattagtggttaatcacatt-tagattcagtttgttatgaattttgttacaagttagttagagattagct 140  Q
    ||||||||||||||  | ||||||||||||| |||||||||||||| ||| | | || |||||||||||||  ||||||||||||  |||||||||||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattagct 37355671  T
Q  141 cata-aggttagggtttgttacttagcttgtacttcaag 178  Q
      ||   |||||||||||||||||  |||||||||||||    
T  37355672 tgtatttgttagggtttgttactttacttgtacttcaag 37355710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 13828248 - 13828101
Alignment:
Q  42 ttaattcaagtttagtttagtgataatcacaattagt-ggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagct 140  Q
    ||||||||||||||  |||||||||||||   ||||| ||||||||||||||  |||  ||||||| |||| ||||||||||||| |||||||  || ||    
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  141 cataa-ggttagggtttgttacttagcttgtacttcaagcaacctaac 187  Q
     ||||  |||||||| |||||| | |||||| |||||||| |||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagctacctaac 13828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 733811 - 733670
Alignment:
Q  43 taattcaagtttagtttagtgataatcacaattag-tggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctc 141  Q
    |||||||||||||| |||||||||||||   |||  ||||||||||||| |  | | ||||||||||||| |||||||||| || ||||||| |||||      
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  142 ataaggt-tagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| | ||| ||||||||| | |||||| |||| ||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaac 733670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 8675192 - 8675228
Alignment:
Q  255 tcaatcacataacctttctcttctctcattctctcta 291  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  8675192 tcaatcacataatctttctcttctctcaatctctcta 8675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 49603 - 49445
Alignment:
Q  29 ctgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagtta 126  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| |||||||||||||     
T  49603 ctgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 49504  T
Q  127 gttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  49503 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 49445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 45022 - 44865
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  45022 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44923  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  44922 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 44865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 2980 - 3137
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacat-ttagattcagtttgttatgaattttgttacaagttag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  || | || ||||||||||||| ||||||||||||| |    
T  2980 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3079  T
Q  128 ttagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    |||||| |||||  |||||   ||||| ||||||||| | |||||| |||||||||||    
T  3080 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

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Target: scaffold0440; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 7506 - 7662
Alignment:
Q  30 tgttagtttgttttaattcaagtttagttt-agtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagt 128  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| || | || ||||||||||||| ||||||||||||| ||    
T  7506 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttgt 7605  T
Q  129 tagagattagctcataag---gttagggtttgttacttagcttgtacttcaagcaac 182  Q
    ||||| |||||  |||||   ||||| ||||||||| | ||||||  ||||||||||    
T  7606 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

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Target: scaffold0006 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 60302 - 60171
Alignment:
Q  32 ttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattc-agtttgttatgaattttgttacaagttagtta 130  Q
    ||||||||||||||||||||||   ||  |  |||||||||||||||| |||||||||||||  ||  |||||||||| ||||||||||| |||| ||||    
T  60302 ttagtttgttttaattcaagttactttgtgatataatcacaattagtgattaatcacatttaatttttagtttgttataaattttgttaccagtttgtta 60203  T
Q  131 gagattagctcataag-gttagggtttgttac 161  Q
    || ||||||||||||| || ||||||||||||    
T  60202 gaaattagctcataagagtcagggtttgttac 60171  T

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