View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19042_low_14 (Length: 236)
Name: NF19042_low_14
Description: NF19042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19042_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 338036 - 337814
Alignment:
| Q |
1 |
aatgaagtattttggtaatcacggcttgaaggatgcgttcaggtctaaataatatctgcattgatttaagaatatttaaggg--acaaatacgtcaactt |
98 |
Q |
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| T |
338036 |
aatgaagtattttggtaatcacggcttgaaggatgcgttcaggtctaaataatatctgcattgatttaagaatatttaagggggacaaatacgtcaactt |
337937 |
T |
|
| Q |
99 |
tatgtctgaagcagctttgagtgcatgtttctcaaataaatgtgacacatccttgtgtttttaacatccagtgtttgttcacgaagaagatgttaaagtt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
337936 |
tatgtctgaagcagctttgagtgcatgtttctcaaataaatgtgacacatacttgtgttttgaacatccagtgtttgttcacgaagaagatgttaaagtt |
337837 |
T |
|
| Q |
199 |
ggtgaaaattgaatagaaccaag |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
337836 |
ggtgaaaattgaatagaaccaag |
337814 |
T |
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